1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtacgtctcatttctgaatgtttccatcctgttaaacctagaagcaaaggttacatctgcattttctttcacgttataattatgatgtgatttatttgatcagaatcttcccatgactaaatctctagtagattcgtcattaattggtactttgttctcattttcggggagtagGGAAGTGTTGACTGGAGATATACCTTACGCTGGCCTAACTCCTTTGCAAGCTGCAATTGGTGTCGTTCAACG
species | Physcomitrella patens |
transcript | PP1S96_95V6.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ACCCTTACGATCACAAAGCTGACGTTTATTCCNTTTGGGATCACAATGTG GGAAGTGTTGACTGGAGATATACCTTACGCTGGCCTAACTCCTTTGCAAGCEST: gi|162271342|gb|FC446915.1|FC446915
genomic: AACCTTACGATCACAAAGCTGACGTTTATTCC-TTTGGGATCACAATGTGgtacgtctca ... cggggagtagGGAAGTGTTGACTGGAGATATACCTTACGCTGGCCTAACTCCTTTGCAAGC
EST: AAACCTTACGATCACAAAGCTGACGTTTATTCCTTTGGGATCACAATGTG GGAAGTGTTGACTGGAGATATACCTTACGCTGGCCTAACTCCTTTGCAAGCEST: gi|37851075|gb|BJ609083.1|BJ609083
genomic: AAACCTTACGATCACAAAGCTGACGTTTATTCCTTTGGGATCACAATGTGgtacgtctca ... cggggagtagGGAAGTGTTGACTGGAGATATACCTTACGCTGGCCTAACTCCTTTGCAAGC
EST: TTGGGATCACAATGTG GGAAGTGTTGACTGGAGATATACCTTACGCTGGCCTAACTCCCTTTGCAAGEST: gi|162271343|gb|FC446916.1|FC446916
genomic: TTGGGATCACAATGTGgtacgtctca ... cggggagtagGGAAGTGTTGACTGGAGATATACCTTACGCTGGCCTAACT-CCTTTGCAAG
EST: AAACCTTACGATCACAAAGCTGACGTTTATTCCTTTGGGATCACAATGTG GGAAGTGTTGACTGGAGATATACCTTACGCTGGCCTAACTCCTTTGCAAGC
genomic: AAACCTTACGATCACAAAGCTGACGTTTATTCCTTTGGGATCACAATGTGgtacgtctca ... cggggagtagGGAAGTGTTGACTGGAGATATACCTTACGCTGGCCTAACTCCTTTGCAAGC
aatctctagtagattcgtcattaattggtactttgttctcattttcggggagtagGGAAGTGTTGACTGGAGATATACCTTACGCTGGCCTAACTCCTTTGCAAGCTGCAATTGGTGTCGTTCAACG
ctttgttctcattttc CT-rich tract
tcattaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtctcatttctgaatgtttccatcctgttaaacctagaagcaaaggttacatctgcattttctttcacgttataattatgatgtgatttatttgatcagaatcttcccatgactaaatctctagtagattcgtcattaattggtactttgttctcattttcggggagtagGGAAGTGTTGACTGGAGATATACCTTACGCTGGCCTAACTCCTTTGCAAGCTGCAATTGGTGTCGTTCAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC