1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCAACGCTGGATCAAACAAGGCAGCTACTAGTGCGACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTCgtgagtaaaaaaaaactctatctgctttacgtgacttgtgctctcgttgtaagtgtcaatcctgctcggtgttgaagaggtttcagaagctggaattttt...
species | Physcomitrella patens |
transcript | PP1S96_94V6.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTC ACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGGEST: gi|162261021|gb|FC437428.1|FC437428
genomic: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTCgtgagtaaaa ... tttgaaacagACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGG
EST: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTC ACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGGEST: gi|162225111|gb|FC401735.1|FC401735
genomic: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTCgtgagtaaaa ... tttgaaacagACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGG
EST: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTC ACGAGAAAGTGCCTTTTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGGEST: gi|37826092|gb|BJ584104.1|BJ584104
genomic: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTCgtgagtaaaa ... tttgaaacagACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGG
EST: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTC ACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGGEST: gi|67578369|gb|BJ950536.1|BJ950536
genomic: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTCgtgagtaaaa ... tttgaaacagACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGG
EST: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTC ACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGGEST: gi|67695053|gb|BJ955286.1|BJ955286
genomic: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTCgtgagtaaaa ... tttgaaacagACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGG
EST: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTC ACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGGEST: gi|67574919|gb|BJ947743.1|BJ947743
genomic: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTCgtgagtaaaa ... tttgaaacagACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGG
EST: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTC ACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGGEST: gi|67701255|gb|BJ961488.1|BJ961488
genomic: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTCgtgagtaaaa ... tttgaaacagACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGG
EST: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTC ACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGGEST: gi|67698680|gb|BJ958913.1|BJ958913
genomic: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTCgtgagtaaaa ... tttgaaacagACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGG
EST: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTC ACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGGEST: gi|67574035|gb|BJ946859.1|BJ946859
genomic: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTCgtgagtaaaa ... tttgaaacagACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGG
EST: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTC ACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGGEST: gi|67698346|gb|BJ958579.1|BJ958579
genomic: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTCgtgagtaaaa ... tttgaaacagACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGG
EST: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTC ACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGGEST: gi|67697424|gb|BJ957657.1|BJ957657
genomic: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTCgtgagtaaaa ... tttgaaacagACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGG
EST: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTC ACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGGEST: gi|67697361|gb|BJ957594.1|BJ957594
genomic: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTCgtgagtaaaa ... tttgaaacagACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGG
EST: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTC ACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGGEST: gi|37828988|gb|BJ587000.1|BJ587000
genomic: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTCgtgagtaaaa ... tttgaaacagACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGG
EST: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTC ACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGGEST: gi|22491864|gb|BU051787.1|BU051787
genomic: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTCgtgagtaaaa ... tttgaaacagACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGG
EST: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTC ACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGGEST: gi|37830434|gb|BJ588446.1|BJ588446
genomic: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTCgtgagtaaaa ... tttgaaacagACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGG
EST: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTC ACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGGEST: gi|67575221|gb|BJ948045.1|BJ948045
genomic: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTCgtgagtaaaa ... tttgaaacagACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGG
EST: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTC ACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGGEST: gi|162225112|gb|FC401736.1|FC401736
genomic: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTCgtgagtaaaa ... tttgaaacagACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGG
EST: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTC ACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGG
genomic: GACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTCgtgagtaaaa ... tttgaaacagACGAGAAAGTGCCTTCTGAACTCAAGAAGAACATTATGCAGGCGCGGTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAACGCTGGATCAAACAAGGCAGCTACTAGTGCGACTGGCTTGAATACAAAAAAGCTTGATGACGAGACAGATGTTCTTGCTCgtgagtaaaaaaaaactctatctgctttacgtgacttgtgctctcgttgtaagtgtcaatcctgctcggtgttgaagaggtttcagaagctggaattttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaaa