1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtttgaaataagggatctctgcatgcgttacacgtctgtttcttttgctgtttgtctcccatcgtctcaaacaaattcgattttctacgatgttgaacagCTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCGGATAAGGCAGTGGAGGATGTAGGAGAATCTGCGAAGGTTGCAGGAGGCG
species | Physcomitrella patens |
transcript | PP1S96_37V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGG CTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCGEST: gi|67574689|gb|BJ947513.1|BJ947513
genomic: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGGgtttggagcc ... tgttgaacagCTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCG
EST: CGGTGCCCTANGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGG CTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCGEST: gi|208352205|gb|DC906308.1|DC906308
genomic: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGGgtttggagcc ... tgttgaacagCTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCG
EST: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGG CTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCGEST: gi|208392681|gb|DC934011.1|DC934011
genomic: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGGgtttggagcc ... tgttgaacagCTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCG
EST: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGG CTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCGEST: gi|100443744|gb|BY963841.1|BY963841
genomic: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGGgtttggagcc ... tgttgaacagCTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCG
EST: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGG CTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCGEST: gi|100386432|gb|BY951228.1|BY951228
genomic: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGGgtttggagcc ... tgttgaacagCTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCG
EST: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGG CTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCGEST: gi|18329568|gb|BJ161574.1|BJ161574
genomic: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGGgtttggagcc ... tgttgaacagCTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCG
EST: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGG CTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCGEST: gi|18366519|gb|BJ198598.1|BJ198598
genomic: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGGgtttggagcc ... tgttgaacagCTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCG
EST: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGG CTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCGEST: gi|18355429|gb|BJ187488.1|BJ187488
genomic: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGGgtttggagcc ... tgttgaacagCTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCG
EST: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGG CTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCGEST: gi|18359159|gb|BJ191219.1|BJ191219
genomic: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGGgtttggagcc ... tgttgaacagCTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCG
EST: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGG CTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCGEST: gi|18329388|gb|BJ161394.1|BJ161394
genomic: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGGgtttggagcc ... tgttgaacagCTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCG
EST: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGG CTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCGEST: gi|18343533|gb|BJ175571.1|BJ175571
genomic: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGGgtttggagcc ... tgttgaacagCTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCG
EST: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGG CTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCGEST: gi|208376907|gb|DC906848.1|DC906848
genomic: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGGgtttggagcc ... tgttgaacagCTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCG
EST: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGG CTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCGEST: gi|18359779|gb|BJ191840.1|BJ191840
genomic: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGGgtttggagcc ... tgttgaacagCTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCG
EST: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGG CTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCG
genomic: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGGgtttggagcc ... tgttgaacagCTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCG
tgctgtttgtctcccatcgtctcaaacaaattcgattttctacgatgttgaacagCTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCGGATAAGGCAGTGGAGGATGTAGGAGAATCTGCGAAGGTTGCAGGAGGCG
aaacaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgaaataagggatctctgcatgcgttacacgtctgtttcttttgctgtttgtctcccatcgtctcaaacaaattcgattttctacgatgttgaacagCTTCTGGGCTCCCTGTGCATATCTGAACTCGTTAAGAACAAGATGAAGGCGGATAAGGCAGTGGAGGATGTAGGAGAATCTGCGAAGGTTGCAGGAGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA