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gtacgttcactgtataagtgctgatagttgtagcagcctctcggcagcattatgtctaacacttcagagtgatatatttgatattcagGGCAACTTATCGCTTCGGGAACTTTTACTTGGGAACAACAACATCACTGATTCGAGCTCAACGGACTTGATCAAGGCCCTAGGAACGCATCCACGACTTG
species | Physcomitrella patens |
transcript | PP1S96_156V6.2 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ACAATAGAATCACGTCAACTGGGGCTTGCGCAATCTTCACTTGGCTACAG GGCAACTTATCGCTTCGGGAACTTTTACTTGGGAACAACAACATCACTGATEST: gi|37844229|gb|BJ602237.1|BJ602237
genomic: ACAATAGAATCACGTCAACTGGGGCTTGCGCAATCTTCACTTGGCTACAGgtacgttcac ... tgatattcagGGCAACTTATCGCTTCGGGAACTTTTACTTGGGAACAACAACATCACTGAT
EST: ACAATAGAATCACGTCAACTGGGGCTTGCGCAATCTTCACTTGGCTACAG GGCAACTTATCGCTTCGGGAACTTTTACTTGGGAACAACAACATCACTGATEST: gi|37837723|gb|BJ595731.1|BJ595731
genomic: ACAATAGAATCACGTCAACTGGGGCTTGCGCAATCTTCACTTGGCTACAGgtacgttcac ... tgatattcagGGCAACTTATCGCTTCGGGAACTTTTACTTGGGAACAACAACATCACTGAT
EST: ACAATAGAATCACGTCAACTGGGGCTTGCGCAATCTTCACTTGGCTACAG GGCAACTTATCGCTTCGGGAACTTTTACTTGGGAACAACAACATCACTGATEST: gi|19780685|gb|BQ039595.1|BQ039595
genomic: ACAATAGAATCACGTCAACTGGGGCTTGCGCAATCTTCACTTGGCTACAGgtacgttcac ... tgatattcagGGCAACTTATCGCTTCGGGAACTTTTACTTGGGAACAACAACATCACTGAT
EST: ACAATAGAATCACGTCAACTGGGGCTTGCGCAATCTTCACTTGGCTACAG GGCAACTTATCGCTTCGGGAACTTTTACTTGGGAACAACAACATCACTGAT
genomic: ACAATAGAATCACGTCAACTGGGGCTTGCGCAATCTTCACTTGGCTACAGgtacgttcac ... tgatattcagGGCAACTTATCGCTTCGGGAACTTTTACTTGGGAACAACAACATCACTGAT
cagcctctcggcagcattatgtctaacacttcagagtgatatatttgatattcagGGCAACTTATCGCTTCGGGAACTTTTACTTGGGAACAACAACATCACTGATTCGAGCTCAACGGACTTGATCAAGGCCCTAGGAACGCATCCACGACTTG
tgatatatttgatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgttcactgtataagtgctgatagttgtagcagcctctcggcagcattatgtctaacacttcagagtgatatatttgatattcagGGCAACTTATCGCTTCGGGAACTTTTACTTGGGAACAACAACATCACTGATTCGAGCTCAACGGACTTGATCAAGGCCCTAGGAACGCATCCACGACTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA