Sequence
atgc intronic sequence ATGC exonic sequenceGTTGTCCCGCCAGCTATCGAAACGCTATCCAGGCATACCGATCACACAGGCATTGCGGAATGAGAACGAGATGTTGCGGCAAGAACTCCAGCGCTAACGGgttagggctacttcagttcaaatttacctctcattttcaaaggaatcttctacagcatgcattctttaagccttgggtatatctacgttgattcgtgtatgtgaatttttggctcgtagtattttctaacagtttgtgtggctcgtcaatcag
Basic information
| species | Physcomitrella patens |
| transcript | PP1S96_155V6.3 |
| intron # | 2 |
| splice site | 5' |
| intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37830761|gb|BJ588773.1|BJ588773EST: CATTGCGGAATGAGAACGAGATGTTGCGGCAAGAACTCCAGCGCTAACGG GCTTGTATGGAGTACGATTATGCGCTCGTGGTCGAGCAGCTTATTGAGTTC
genomic: CATTGCGGAATGAGAACGAGATGTTGCGGCAAGAACTCCAGCGCTAACGGgttagggcta ... cgtcaatcagGCTTGTATGGAGTACGATTATGCGCTCGTGGTCGAGCAGCTTATTGAGTTC
Putative cis-regulatory sequences
| atgc | intron | ATGC | exonic elements by Pertea et al. |
| ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGTCCCGCCAGCTATCGAAACGCTATCCAGGCATACCGATCACACAGGCATTGCGGAATGAGAACGAGATGTTGCGGCAAGAACTCCAGCGCTAACGGgttagggctacttcagttcaaatttacctctcattttcaaaggaatcttctacagcatgcattctttaagccttgggtatatctacgttgattcgtgtatgtgaatttttggctcgtagtattttctaacagtttgtgtggctcgtcaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
