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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccgtgttttgttcaatgtgttcttcctcatgtgattttacagaatcctacatattctgtaaatcgactgtactgattagttgtcatgattgggcagcgtatctgagattgatggagactctgatttttctgcagGTGCAATGGAATGTTTGCCATGCTCTCGGGAACCTGTTTTTGAACCGAAGTATTCAACTATCATCTGCACCGTG

Basic information

species Physcomitrella patens
transcript PP1S96_125V6.1
intron # 22
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S96_125V6.1 (Physcomitrella patens), 3'ss of exon 22
lower sequence: LOC_Os08g05670.1 (Oryza sativa), 3'ss of exon 10
gtccgtgttttgttcaatgtgttcttcctcatgtgattttacagaatcctacatattctgtaaatcgactgtactgattagttgtcatgattgggcagcgtatctgagattgatggagactctgatttttctgcagGTGCAATGGAATGTTTGCCATGCTCTCGGGAACCTGTTTTTGAACCGAAGTATTCAACTATCATCTGCACCGTG
                                |   || |   |   |  |   | |   ||||| || |||  | | | ||    ||  ||  |     || ||    ||||    |  ||    |||  | ||||| |||||||||||||||||||||||  | ||| | ||  |||||   |   |   |||  ||  |   || ||
--------------------------------gaacttattttgggacggaaggagtaattaaatagattgt--taaat-gtgaagattctttagataaataactactcttgacat-gtttccccctttcattcagGTTCAATGGAATGTTTGCCATGCTCTTAGCAACTTATTCATGAACGACACCTTGAGACTTCCAGATATGCCTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtcatgattgggcagcgtatctgagattgatggagactctgatttttctgcagGTGCAATGGAATGTTTGCCATGCTCTCGGGAACCTGTTTTTGAACCGAAGTATTCAACTATCATCTGCACCGTG
                                      ctctgat  putative branch site (score: 4)
                                            tttttctgc  CT-rich tract
                                         tgattttt  TA-rich tract