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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagttattatttagtgtactagataagtaattggacagtaagctttttttttttttttttttgtaacatctatcttctttgttcgctgttatgcaatatatgagctttatttttgtactagcgcaattccgtattgggtggcagatctgttgattgttcgcttttcaatgagcagGTAATTAAGAAACTAAAATCAAGGCCATTACTAGCGATGGCTGCTGGTATTACTGTGCTTCTTGTCTTTGTTCATTCCAGCATCGGACTTATCGTGCTGT

Basic information

species Physcomitrella patens
transcript PP1S96_101V6.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162195666|gb|FC370329.1|FC370329
EST:     ATCGACCTCGAGCCCGAGATTCAAGGTCCTCCAATTCAAACGTTAAGAAG                         GTAATTAAGAAACTAAAATCAAGGCCATTACTAGCGATGGCTGCTGGTATT
genomic: ATCGACCTCGAGCCCGAGATTCAAGGTCCTCCAATTCAAACGTTAAGAAGgtacagttat ... caatgagcagGTAATTAAGAAACTAAAATCAAGGCCATTACTAGCGATGGCTGCTGGTATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgcaattccgtattgggtggcagatctgttgattgttcgcttttcaatgagcagGTAATTAAGAAACTAAAATCAAGGCCATTACTAGCGATGGCTGCTGGTATTACTGTGCTTCTTGTCTTTGTTCATTCCAGCATCGGACTTATCGTGCTGT
                           tgttgat  putative branch site (score: 4)
                                    ttcgcttttc  putative PPT
                                         ttttcaat  TA-rich tract