Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagggttactgtcgcatacaagtggactctgctgcatcgttctacgcgaaacagcgttcaaaagtcagtcatgagttataacttgtatgttctggcctagGTTCTGAGTGGAGTCGCGTTGTGGACGTCAAAAGCATCGAATGCTCCCCCAGATAAGGGGCATCCATACG

Basic information

species Physcomitrella patens
transcript PP1S95_92V6.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162189279|gb|FC366762.1|FC366762
EST:     CTGGCAGCACCGCCATTATTGCAGACGCTGCACATTCTGCATCAGACATT                         GTTCTGAGTGGAGTCGCGTTGTGGACGTCAAAAGCATCGAATGCTCCCCCA
genomic: CTGGCAGCACCGCCATTATTGCAGACGCTGCACATTCTGCATCAGACATTgtacgttata ... tctggcctagGTTCTGAGTGGAGTCGCGTTGTGGACGTCAAAAGCATCGAATGCTCCCCCA
EST: gi|162159616|gb|FC335794.1|FC335794
EST:     CTGGCAGCACCGCCATTATTGCAGACGCTGCACATTCTGCATCAGACATT                         GTTCTGAGTGGAGTCGCGTTGTGGACGTCAAAAGCATCGAATGCTCCCCCA
genomic: CTGGCAGCACCGCCATTATTGCAGACGCTGCACATTCTGCATCAGACATTgtacgttata ... tctggcctagGTTCTGAGTGGAGTCGCGTTGTGGACGTCAAAAGCATCGAATGCTCCCCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgaaacagcgttcaaaagtcagtcatgagttataacttgtatgttctggcctagGTTCTGAGTGGAGTCGCGTTGTGGACGTCAAAAGCATCGAATGCTCCCCCAGATAAGGGGCATCCATACG
                              ttataac  putative branch site (score: 2)
                              ttataactt  TA-rich tract