1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCATGCTCGCCGTCTTTACGAGGATTCTAAACTTCAACAGCAGCGCGTTCAAGGTGCGGAGATTGAGTTTGCCGCAGACTGGAAAGCTACATTTTTGCAGgtttgcattcccctaccacttggatcactatttctatgcacgattttacatgggtgtgtttaccaacctattgtgtggacggtggtggcgcatcaataaa...
species | Physcomitrella patens |
transcript | PP1S95_67V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAGGTGCGGAGATTGAGTTTGCCGCAGACTGGAAAGCTACATTTTTGCAG TTTTTGCCACTTCGCTTCATTTCTAGGAGATGGGGTGAGTTCACATCAGTGEST: gi|162188513|gb|FC365111.1|FC365111
genomic: AAGGTGCGGAGATTGAGTTTGCCGCAGACTGGAAAGCTACATTTTTGCAGgtttgcattc ... attggtgcagTTTTTGCCACTTCGCTTCATTTCTAGGAGATGGGGTGAGTTCACATCAGTG
EST: AAGGTGCGGAGATTGAGTTTGCCGCAGACTGGAAAGCTACATTTTTGCAG TTTTTGCCACTTCGCTTCATTTCTAGGAGATGGGGTGAGTTCACATCAGTGEST: gi|100369374|gb|BY948068.1|BY948068
genomic: AAGGTGCGGAGATTGAGTTTGCCGCAGACTGGAAAGCTACATTTTTGCAGgtttgcattc ... attggtgcagTTTTTGCCACTTCGCTTCATTTCTAGGAGATGGGGTGAGTTCACATCAGTG
EST: AAGGTGCGGAGATTGAGTTTGCCGCAGACTGGAAAGCTACATTTTTGCAG TTTTTGCCACTTCGCTTCATTTCTAGGAGATGGGGTGAGTTCACATCAGTGEST: gi|67571462|gb|BJ944286.1|BJ944286
genomic: AAGGTGCGGAGATTGAGTTTGCCGCAGACTGGAAAGCTACATTTTTGCAGgtttgcattc ... attggtgcagTTTTTGCCACTTCGCTTCATTTCTAGGAGATGGGGTGAGTTCACATCAGTG
EST: AAGGTGCGGAGATTGAGTTTGCCGCAGACTGGAAAGCTACATTTTTGCAG TTTTTGCCACTTCGCTTCATTTCTAGGAGATGGGGTGAGTTCACATCAGTGEST: gi|162151225|gb|FC327185.1|FC327185
genomic: AAGGTGCGGAGATTGAGTTTGCCGCAGACTGGAAAGCTACATTTTTGCAGgtttgcattc ... attggtgcagTTTTTGCCACTTCGCTTCATTTCTAGGAGATGGGGTGAGTTCACATCAGTG
EST: AAGGTGCGGAGATTGAGTTTGCCGCAGACTGGAAAGCTACATTTTTGCAG TTTTTGCCACTTCGCTTCATTTCTAGGAGATGGGGTGAGTTCACATCAGTG
genomic: AAGGTGCGGAGATTGAGTTTGCCGCAGACTGGAAAGCTACATTTTTGCAGgtttgcattc ... attggtgcagTTTTTGCCACTTCGCTTCATTTCTAGGAGATGGGGTGAGTTCACATCAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATGCTCGCCGTCTTTACGAGGATTCTAAACTTCAACAGCAGCGCGTTCAAGGTGCGGAGATTGAGTTTGCCGCAGACTGGAAAGCTACATTTTTGCAGgtttgcattcccctaccacttggatcactatttctatgcacgattttacatgggtgtgtttaccaacctattgtgtggacggtggtggcgcatcaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT