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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acgctggatggcgtcatagcaacttgtgatgtcctgtcttttccatgaagctgtgcaaatagggttattctcagtgaaactgaattaatgtccaatgcagATTTCGAAGGGGGATATTGTGCCTCCAGTCGGACTCAAAGATGAGGAAGGCAAATTGGTGAATCTAGACAAGTTCAGGGGCAAGCCCCTGGTGCTGTACT

Basic information

species Physcomitrella patens
transcript PP1S95_45V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67578222|gb|BJ950389.1|BJ950389
EST:     CCTCGTTCCATGTCAAGTCCCGCCACACCTCACCCCTCACCATCTGCAAG                         ATTTCGAAGGGGGATATTGTGCCTCCAGTCGGACTCAAAGATGAGGAAGGC
genomic: CCTCGTTCCATGTCAAGTCCCGCCACACCTCACCCCTCACCATCTGCAAGgtatgtattg ... tccaatgcagATTTCGAAGGGGGATATTGTGCCTCCAGTCGGACTCAAAGATGAGGAAGGC
EST: gi|18364209|gb|BJ196282.1|BJ196282
EST:     CCTCGTTCCATGTCAAGTCCCGCCACACCTCACCCCTCACCATCTGCAAG                         ATTTCGAAGGGGGATATTGTGCCTCCAGTCGGACTCAAAGATGAGGAAGGC
genomic: CCTCGTTCCATGTCAAGTCCCGCCACACCTCACCCCTCACCATCTGCAAGgtatgtattg ... tccaatgcagATTTCGAAGGGGGATATTGTGCCTCCAGTCGGACTCAAAGATGAGGAAGGC
EST: gi|19790520|gb|BQ041917.1|BQ041917
EST:     CCTCGTTCCATGTCAAGTCCCGCCACACCTCACCCCTCACCATCTGCAAG                         ATTTCGAAGGGGGATATTGTGCCTCCAGTCGGACTCAAAGATGAGGAAGGC
genomic: CCTCGTTCCATGTCAAGTCCCGCCACACCTCACCCCTCACCATCTGCAAGgtatgtattg ... tccaatgcagATTTCGAAGGGGGATATTGTGCCTCCAGTCGGACTCAAAGATGAGGAAGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaagctgtgcaaatagggttattctcagtgaaactgaattaatgtccaatgcagATTTCGAAGGGGGATATTGTGCCTCCAGTCGGACTCAAAGATGAGGAAGGCAAATTGGTGAATCTAGACAAGTTCAGGGGCAAGCCCCTGGTGCTGTACT
                                     aattaat  putative branch site (score: 3)
                                   tgaattaat  TA-rich tract