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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttaccttgaatcctaaacctcgtttgtctttctagtttggcagttttttccaattttatttttattcttgatttgtattcaatttcaattttgcagCCACGAACCTCGGAGACTAATTCGCTTTATGAACTAGATCGGGCTACACAG

Basic information

species Physcomitrella patens
transcript PP1S95_19V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208358831|gb|DC957631.1|DC957631
EST:     GGGGTAGTCGGAACCCTCAAAAGCTGCAACCCACAATTGCCACACAGAAT                         CCACGAACCTCGGAGACTAATTCGCTTTATGAACTAGATCGGGCTACACAG
genomic: GGGGTAGTCGGAACCCTCAAAAGCTGCAACCCACAATTGCCACACAGAATgtaatttacc ... aattttgcagCCACGAACCTCGGAGACTAATTCGCTTTATGAACTAGATCGGGCTACACAG
EST: gi|162227677|gb|FC402345.1|FC402345
EST:     GGGGTAGTCGGAACCCTCAAAAGCTGCAACCCACAATTGCCACACAGAAT                         CCACGAACCTCGGAGACTAATTCGCTTTATGAACTAGATCGGGCTACACAG
genomic: GGGGTAGTCGGAACCCTCAAAAGCTGCAACCCACAATTGCCACACAGAATgtaatttacc ... aattttgcagCCACGAACCTCGGAGACTAATTCGCTTTATGAACTAGATCGGGCTACACAG
EST: gi|162227676|gb|FC402344.1|FC402344
EST:     GGGGTAGTCGGAACCCTCAAAAGCTGCAACCCACAATTGCCACACAGAAT                         CCACGAACCTCGGAGACTAATTCGCTTTATGAACTAGATCGGGCTACACAG
genomic: GGGGTAGTCGGAACCCTCAAAAGCTGCAACCCACAATTGCCACACAGAATgtaatttacc ... aattttgcagCCACGAACCTCGGAGACTAATTCGCTTTATGAACTAGATCGGGCTACACAG
EST: gi|37830803|gb|BJ588815.1|BJ588815
EST:     GGGGTAGTCGGAACCCTCAAAAGCTGCAACCCACAATTGCCACACAGAAT                         CCACGAACCTCGGAGACTAATTCGCTTTATGAACTAGATCGGGCTACACAG
genomic: GGGGTAGTCGGAACCCTCAAAAGCTGCAACCCACAATTGCCACACAGAATgtaatttacc ... aattttgcagCCACGAACCTCGGAGACTAATTCGCTTTATGAACTAGATCGGGCTACACAG
EST: gi|37853680|gb|BJ611688.1|BJ611688
EST:     GGGGTAGTCGGAACCCTCAAAAGCTGCAACCCACAATTGCCACACAGAAT                         CCACGAACCTCGGAGACTAATTCGCTTTATGAACTAGATCGGGCTACACAG
genomic: GGGGTAGTCGGAACCCTCAAAAGCTGCAACCCACAATTGCCACACAGAATgtaatttacc ... aattttgcagCCACGAACCTCGGAGACTAATTCGCTTTATGAACTAGATCGGGCTACACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttttttccaattttatttttattcttgatttgtattcaatttcaattttgcagCCACGAACCTCGGAGACTAATTCGCTTTATGAACTAGATCGGGCTACACAG
                        tcttgat  putative branch site (score: 4)
          aattttatttttattc  TA-rich tract