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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caccaaactttgtagaatttctaaacctggagggaattgaatgtaagcatttttataaattctactaacaactttgatttggaactgctttgaatgtcagTGTGTTCAGAACTAATCGGTCCAAAGTTATCATCTTAACATCACATCCAGCCAAATGGGATAGATTAAGTTGAG

Basic information

species Physcomitrella patens
transcript PP1S95_144V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18346359|gb|BJ178402.1|BJ178402
EST:     TTCACCCGACTTTTTTAAGTAGTAAAATATACTAAAGCATTCCTGGTGGG                         TGTGTTCAGAACTAATCGGTCCAAAGTTATCATCTTAACATCACATCCAGC
genomic: TTCACCCGACTTTTTTAAGTAGTAAAATATACTAAAGCATTCCTGGTGGGgtaataattt ... tgaatgtcagTGTGTTCAGAACTAATCGGTCCAAAGTTATCATCTTAACATCACATCCAGC
EST: gi|18343331|gb|BJ175369.1|BJ175369
EST:     TTCACCCGACTTTTTTAAGTAGTAAAATATACTAAAGCATTCCTGGTGGG                         TGTGTTCAGAACTAATCGGTCCAAAGTTATCATCTTAACATCACATCCAGC
genomic: TTCACCCGACTTTTTTAAGTAGTAAAATATACTAAAGCATTCCTGGTGGGgtaataattt ... tgaatgtcagTGTGTTCAGAACTAATCGGTCCAAAGTTATCATCTTAACATCACATCCAGC
EST: gi|18351297|gb|BJ183349.1|BJ183349
EST:     TTCACCCGACTTTTTTAAGTAGTAAAATATACTAAAGCATTCCTGGTGGG                         TGTGTTCAGAACTAATCGGTCCAAAGTTATCATCTTAACATCACATCCAGC
genomic: TTCACCCGACTTTTTTAAGTAGTAAAATATACTAAAGCATTCCTGGTGGGgtaataattt ... tgaatgtcagTGTGTTCAGAACTAATCGGTCCAAAGTTATCATCTTAACATCACATCCAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcatttttataaattctactaacaactttgatttggaactgctttgaatgtcagTGTGTTCAGAACTAATCGGTCCAAAGTTATCATCTTAACATCACATCCAGCCAAATGGGATAGATTAAGTTGAG
                                       ctgcttt  CT-rich tract
 ttttataaattctact  TA-rich tract