1 5' 3' | 2 5' 3' | 3 5' 3' |
GAAGACCTTTCTTAGCCTACGTAAGGTAGCAATGATACCACATTGATTGTTATATACAATACAGACAAGTCCGAGGTTACAAGAACGGCAGTTTACGATGgtatcagagctcaactaaattttcagatcgctttaccactgaactttatactagggttttatggttgttcaattgtattttcagatatatgcaaatcaaaggaatttggattgggcaaaaacttacatagtgactgcattgatgaatttgttgatcag
species | Physcomitrella patens |
transcript | PP1S95_118V6.4 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TATATACAATACAGACAAGTCCGAGGTTACAAGAACGGCAGTTTACGATG GCGATCTCTAGGAGCCGTAAGATTATGATCACAAAAGCAATAGCTTTTGTGEST: gi|18342715|gb|BJ174750.1|BJ174750
genomic: TATATACAATACAGACAAGTCCGAGGTTACAAGAACGGCAGTTTACGATGgtatcagagc ... tgttgatcagGCGATCTCTAGGAGCCGTAAGATTATGATCACAAAAGCAATAGCTTTTGTG
EST: TATATACAATACAGACAAGTCCGAGGTTACAAGAACGGCAGTTTACGATG GCGATCTCTAGGAGCCGTAAGATTATGATCACAAAAGCAATAGCTTTTGTGEST: gi|162248124|gb|FC420844.1|FC420844
genomic: TATATACAATACAGACAAGTCCGAGGTTACAAGAACGGCAGTTTACGATGgtatcagagc ... tgttgatcagGCGATCTCTAGGAGCCGTAAGATTATGATCACAAAAGCAATAGCTTTTGTG
EST: TATATACAATACAGACAAGTCCGAGGTTACAAGAACGGCAGTTTACGATG GCGATCTCTAGGAGCCGTAAGATTATGATCACAAAAGCAATAGCTTTTGTGEST: gi|67703126|gb|BJ963359.1|BJ963359
genomic: TATATACAATACAGACAAGTCCGAGGTTACAAGAACGGCAGTTTACGATGgtatcagagc ... tgttgatcagGCGATCTCTAGGAGCCGTAAGATTATGATCACAAAAGCAATAGCTTTTGTG
EST: TATATACAATACAGACAAGTCCGAGGTTACAAGAACGGCAGTTTACGATG GCGATCTCTAGGAGCCGTAAGATTATGATCACAAAAGCAATAGCTTTTGTGEST: gi|100416832|gb|BY993111.1|BY993111
genomic: TATATACAATACAGACAAGTCCGAGGTTACAAGAACGGCAGTTTACGATGgtatcagagc ... tgttgatcagGCGATCTCTAGGAGCCGTAAGATTATGATCACAAAAGCAATAGCTTTTGTG
EST: TATATACAATACAGACAAGTCCGAGGTTACAAGAACGGCAGTTTACGATG GCGATCTCTAGGAGCCGTAAGATTATGATCACAAAAGCAATAGCTTTTGTG
genomic: TATATACAATACAGACAAGTCCGAGGTTACAAGAACGGCAGTTTACGATGgtatcagagc ... tgttgatcagGCGATCTCTAGGAGCCGTAAGATTATGATCACAAAAGCAATAGCTTTTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGACCTTTCTTAGCCTACGTAAGGTAGCAATGATACCACATTGATTGTTATATACAATACAGACAAGTCCGAGGTTACAAGAACGGCAGTTTACGATGgtatcagagctcaactaaattttcagatcgctttaccactgaactttatactagggttttatggttgttcaattgtattttcagatatatgcaaatcaaaggaatttggattgggcaaaaacttacatagtgactgcattgatgaatttgttgatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC