1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttgctgtgcgtgttctccttttttcgcgcagcctagttggttaacttactgcgtattaattctacgcttctccatgttgtgtataaccttgctgtggtagGTGTGAATTGGGTCATAAGGGTGGACAAGAAGAAAGCTATCTCGTTTTGTGCGGTGCAGTCAAAGGCAGCTGAACCTTACTTGCTGCTATGTGGTGTAAC
species | Physcomitrella patens |
transcript | PP1S95_116V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAACCGTGTGTTGTTATTTACGATGGTGTTTGCCACCCTTTGCA-TGCAG GTGTGAATTGGGTCATAAGGGTGGAEST: gi|100379014|gb|BY986531.1|BY986531
genomic: AAACCGTGTGTTGTTATTTACGATGGTGTTTGCCACC-TTTGCAATGCAGgtgcagctcc ... gctgtggtagGTGTGAATTGGGTCATAAGGGTGGA
EST: GAAACCGTGTGTTGTTATTTACGATGGTGTTTGCCACCTTTGCAATGCAN GTGTGAATTGGGTCATAAGGGTGGACAAGAAGAAAGCTATEST: gi|162205194|gb|FC381292.1|FC381292
genomic: GAAACCGTGTGTTGTTATTTACGATGGTGTTTGCCACCTTTGCAATGCAGgtgcagctcc ... gctgtggtagGTGTGAATTGGGTCATAAGGGTGGACAAGAAGAAAGCTAT
EST: GAAACCGTGTGTTGTTATTTACGATGGTGTTTGCCACCTTTGCAATGCAG GTGTGAATTGNGTCATAAGGGTGGACAAGAAGAAAGCTATCTCGTTTTGTGEST: gi|162264170|gb|FC440232.1|FC440232
genomic: GAAACCGTGTGTTGTTATTTACGATGGTGTTTGCCACCTTTGCAATGCAGgtgcagctcc ... gctgtggtagGTGTGAATTGGGTCATAAGGGTGGACAAGAAGAAAGCTATCTCGTTTTGTG
EST: GAAACCGTGTGTTGTTATTTACGATGGTGTTTGCCACCTTTGCAATGCAG GTGTGAATTGGGTCATAAGGGTGGACAAGAAGAAAGCTATCTCGTTTTGTGEST: gi|100366857|gb|BY948245.1|BY948245
genomic: GAAACCGTGTGTTGTTATTTACGATGGTGTTTGCCACCTTTGCAATGCAGgtgcagctcc ... gctgtggtagGTGTGAATTGGGTCATAAGGGTGGACAAGAAGAAAGCTATCTCGTTTTGTG
EST: AAACCGTGTGTTGTTATTTACGATGGTGTTTGCCACCTTTGNCA-TGCAG GTGTGAATTGGGTCATAAGGGTGGACAAGAAGAAAGCTATCTCGTTTTGT
genomic: AAACCGTGTGTTGTTATTTACGATGGTGTTTGCCACCTTTG-CAATGCAGgtgcagctcc ... gctgtggtagGTGTGAATTGGGTCATAAGGGTGGACAAGAAGAAAGCTATCTCGTTTTGT
ttactgcgtattaattctacgcttctccatgttgtgtataaccttgctgtggtagGTGTGAATTGGGTCATAAGGGTGGACAAGAAGAAAGCTATCTCGTTTTGTGCGGTGCAGTCAAAGGCAGCTGAACCTTACTTGCTGCTATGTGGTGTAAC
ccttgct CT-rich tract
tattaattcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgctgtgcgtgttctccttttttcgcgcagcctagttggttaacttactgcgtattaattctacgcttctccatgttgtgtataaccttgctgtggtagGTGTGAATTGGGTCATAAGGGTGGACAAGAAGAAAGCTATCTCGTTTTGTGCGGTGCAGTCAAAGGCAGCTGAACCTTACTTGCTGCTATGTGGTGTAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT