Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|162190002|gb|FC366576.1|FC366576EST: TGATTGTCACGGGAATGGAGGTGGCCGAGATCGACGGGTCGCCACGAATG GGACCGACATTCGGAGCGATGATGATATCTGGGCAGAAGGCTGCGCACCTG
genomic: TGATTGTCACGGGAATGGAGGTGGCCGAGATCGACGGGTCGCCACGAATGgtgcgtttct ... cgcaattcagGGACCGACATTCGGAGCGATGATGATATCTGGGCAGAAGGCTGCGCACCTG
EST:
gi|162172875|gb|FC348880.1|FC348880EST: TGATTGTCACGGGAATGGAGGTGGCCGAGATCGACGGGTCGCCACGAATG GGACCGACATTCGGAGCGATGATGATATCTGGGCAGAAGGCTGCGCACCTG
genomic: TGATTGTCACGGGAATGGAGGTGGCCGAGATCGACGGGTCGCCACGAATGgtgcgtttct ... cgcaattcagGGACCGACATTCGGAGCGATGATGATATCTGGGCAGAAGGCTGCGCACCTG
EST:
gi|162150665|gb|FC327561.1|FC327561EST: TGATTGTCACGGGAATGGAGGTGGCCGAGATCGACGGGTCGCCACGAATG GGACCGACATTCGGAGCGATGATGATATCTGGGCAGAAGGCTGCGCACCTG
genomic: TGATTGTCACGGGAATGGAGGTGGCCGAGATCGACGGGTCGCCACGAATGgtgcgtttct ... cgcaattcagGGACCGACATTCGGAGCGATGATGATATCTGGGCAGAAGGCTGCGCACCTG
EST:
gi|162198714|gb|FC373482.1|FC373482EST: TGATTGTTACGGGAATGGAGGTGGCCGAGATCGACGGGTCCCCACGAATG GGGCCAACTTTTGGAGCGATGATGATATC
genomic: TGATTGTCACGGGAATGGAGGTGGCCGAGATCGACGGGTCGCCACGAATGgtgcgtttct ... cgcaattcagGGACCGACATTCGGAGCGATGATGATATC
EST:
gi|162168644|gb|FC343906.1|FC343906EST: TGATTGTCACGGGAATGGAGGTGGCCGAGATCGACGGGTCGCCACGAATG GGACCGACATTCGGAGCGATGATGATATCTGGGCAGAAAGCTGCGCACCTG
genomic: TGATTGTCACGGGAATGGAGGTGGCCGAGATCGACGGGTCGCCACGAATGgtgcgtttct ... cgcaattcagGGACCGACATTCGGAGCGATGATGATATCTGGGCAGAAGGCTGCGCACCTG
EST:
gi|162221332|gb|FC398116.1|FC398116EST: TGATTGTCACGGGAATGGAGGTGGCCGAGATCGACGGGTCGCCACGAATG GGACCGACATTCGGAGCGATGATGATATCTGGGCAGAAGGCTGCGCACCTG
genomic: TGATTGTCACGGGAATGGAGGTGGCCGAGATCGACGGGTCGCCACGAATGgtgcgtttct ... cgcaattcagGGACCGACATTCGGAGCGATGATGATATCTGGGCAGAAGGCTGCGCACCTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caatttgacttctggagttggatttaatgattgtgaatgtgaatacgcaattcagGGACCGACATTCGGAGCGATGATGATATCTGGGCAGAAGGCTGCGCACCTGGCCCTGAAGGCGCTAGGCCTTCCCAATGAGCTTGACGGAAACTACAAGC
atttaat putative branch site (score: 4)
atttaatgatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgcgtttcttggatttcagcagtggaaagtgtagcggcaatgtgcattgttgtctagatgtgttgtgtgacttgcatgaaggagatcaatttgacttctggagttggatttaatgattgtgaatgtgaatacgcaattcagGGACCGACATTCGGAGCGATGATGATATCTGGGCAGAAGGCTGCGCACCTGGCCCTGAAGGCGCTAGGCCTTCCCAATGAGCTTGACGGAAACTACAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT