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GCCTTATGGAGCCACAGGCACAGATGGCGGTAGTGTGGACAGCGACACAGATGCTTCGCCTCTGCAAAATTTTCTGCCATCTCAACCAGCACGAGCTGAGgtattgttgttggaaaagaaccatgcatcagaagaaactaatcacaggactcaattgctagagttaacctttacttcttgaaatggaatccaattcattt...
species | Physcomitrella patens |
transcript | PP1S94_39V6.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: ATGCTTCGCCTCTGCAAAATTTTCTGCCATCTCAACCAGCACGAGCTGAG GTTCAAGACAATCTACGAGGGCCATTTCTCCCCGAAGCTGATGATATTGATEST: gi|162174140|gb|FC350343.1|FC350343
genomic: ATGCTTCGCCTCTGCAAAATTTTCTGCCATCTCAACCAGCACGAGCTGAGgtattgttgt ... atttttgcagGTTCAAGACAATCTACGAGGGCCATTTCTCCCCGAAGCTGATGATATTGAT
EST: ATGCTTCGCCTCTGCAAA-TTTTCTGCCATCTCAAC-AGCACGAGCTGAG GTTCAAGAACA-TCTACGAGGGCCATTTCTCEST: gi|162185258|gb|FC361768.1|FC361768
genomic: ATGCTTCGCCTCTGCAAAATTTTCTGCCATCTCAACCAGCACGAGCTGAGgtattgttgt ... atttttgcagGTTCAAGA-CAATCTACGAGGGCCATTTCTC
EST: TGCTTCGCCTCTGCAAAATTTTCTGCCATCTNCA-CCAGCACGAGCTGAG GTTCAAGACAATCTACGAAGGCCATTTCTCTCCGAAGCTGATGATATTGAT
genomic: TGCTTCGCCTCTGCAAAATTTTCTGCCATCT-CAACCAGCACGAGCTGAGgtattgttgt ... atttttgcagGTTCAAGACAATCTACGAGGGCCATTTCTCCCCGAAGCTGATGATATTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTTATGGAGCCACAGGCACAGATGGCGGTAGTGTGGACAGCGACACAGATGCTTCGCCTCTGCAAAATTTTCTGCCATCTCAACCAGCACGAGCTGAGgtattgttgttggaaaagaaccatgcatcagaagaaactaatcacaggactcaattgctagagttaacctttacttcttgaaatggaatccaattcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaagaaa