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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTTGCAATTCCGCATTTGCGGCGCACACATGGCAAGGTTCTCGTTATGGCGTCTACTGCGAGCTGGCTGCCATATCCACGGCAAACACTATACAATgtgagtatatttgtaaaaatagtcacatccaaattacttttgtcaatgagggattgcaatcgggtacaatcgatgaaatcccactctttagttggtgtctgtttcttatatcactatgggtacgattcaaccgcaacttgttgctcactaattaatagcatttgcattgaag

Basic information

species Physcomitrella patens
transcript PP1S94_158V6.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100434977|gb|BY960899.1|BY960899
EST:     TGGCGTCTACTGCGAGCTGGCTGCCATATCCACGGCAAACACTATACAAT                         GCTGGAAAGGCAGGTGTGTTAGCTTTCTTTGACACATTACGAGTAGAGGTT
genomic: TGGCGTCTACTGCGAGCTGGCTGCCATATCCACGGCAAACACTATACAATgtgagtatat ... tgcattgaagGCTGGAAAGGCAGGTGTGTTAGCTTTCTTTGACACATTACGAGTAGAGGTT
EST: gi|162231564|gb|FC408209.1|FC408209
EST:     TGGCGTCTACTGCGAGCTGGCTGCCATATCCACGGCAAACACTATACAAT                         GCTGGAAAGGCAGGTGTGTTAGCTTTCTTTGACACATTACGAGTAGAGGTT
genomic: TGGCGTCTACTGCGAGCTGGCTGCCATATCCACGGCAAACACTATACAATgtgagtatat ... tgcattgaagGCTGGAAAGGCAGGTGTGTTAGCTTTCTTTGACACATTACGAGTAGAGGTT