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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaacatttctctggtcatagcctattggatgtgatggtgtgtgaaggttttgttcattggatgactactgttttgatattgtggaagttgtatcatgtcttcagtgggatgttgaaaagctgttgatgaggatggccttgcatgtagGTCATGACTGATGAAGAAGGACTGCGCGGTGGTTGGTTCTCGGGAAAAATCTTAACGGCGACTAAAACTCAAGCATGCGTAGTTTATGATGAAATCCTGG

Basic information

species Physcomitrella patens
transcript PP1S94_117V6.3
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162249303|gb|FC424818.1|FC424818
EST:     TAGACACTAATCAACAATCTGAACGTATTGCAAAAGGCTCAGCAGTGGAG                         GTCATGACTGATGAAGAAGGACTGCGCGGTGGTTGGTTCTCGGGAAAAATC
genomic: TAGACACTAATCAACAATCTGAACGTATTGCAAAAGGCTCAGCAGTGGAGgtaagaaaca ... ttgcatgtagGTCATGACTGATGAAGAAGGACTGCGCGGTGGTTGGTTCTCGGGAAAAATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatgtcttcagtgggatgttgaaaagctgttgatgaggatggccttgcatgtagGTCATGACTGATGAAGAAGGACTGCGCGGTGGTTGGTTCTCGGGAAAAATCTTAACGGCGACTAAAACTCAAGCATGCGTAGTTTATGATGAAATCCTGG
                            tgttgat  putative branch site (score: 4)
                   ttgaaaa  TA-rich tract