Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaattcactccatttctcagttctgcaagctcgtgtttaagagtttagggctgaatgagtagcatgtgttttactcaacgaagacatgataaaaaaacgcttcatttgatgaactgtgtgacgtcgttgtgcaatatctaaacttttgaacattcttgcgtctgggggggtgcagGCCCTAAACATGTACACAACGTCAGAGACTTTGATCTGTTGTATTCCTCTCGTACAGGGGCTCTCTATAG

Basic information

species Physcomitrella patens
transcript PP1S94_114V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18345910|gb|BJ177953.1|BJ177953
EST:     ATTTGGCTGAAAATTGCAGCCCTCGTGAAATGTTCGCAGCCTTCATGGAG                         GCCCTAAACATGTACACAACGTCAGAGACTTTGATCTGTTGTATTCCTCTC
genomic: ATTTGGCTGAAAATTGCAGCCCTCGTGAAATGTTCGCAGCCTTCATGGAGgcaattcact ... gggggtgcagGCCCTAAACATGTACACAACGTCAGAGACTTTGATCTGTTGTATTCCTCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgtcgttgtgcaatatctaaacttttgaacattcttgcgtctgggggggtgcagGCCCTAAACATGTACACAACGTCAGAGACTTTGATCTGTTGTATTCCTCTCGTACAGGGGCTCTCTATAG
               atctaaa  putative branch site (score: 3)
            aatatctaaactttt  TA-rich tract