1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAATGGCACAAGTGCTACGCAAGGTGCGGCTTCAACAGCAGTCCCTGCCCCTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAAGgtgccaaatgtaatttcttctttgtaacgagacttgcagattccattctcagcgtttacaagtcttgtatttttgttggtcttcagagtcttcagttttt...
species | Physcomitrella patens |
transcript | PP1S93_96V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAAGGTGEST: gi|208387236|gb|DC945535.1|DC945535
genomic: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAA---Ggtgccaaatg ... ttcgttgt
EST: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAAGGTGEST: gi|208387236|gb|DC945535.1|DC945535
genomic: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAA---Ggtgccaaatg ... ttcgttgt
EST: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAAGGTGEST: gi|208387236|gb|DC945535.1|DC945535
genomic: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAA---Ggtgccaaatg ... ttcgttgt
EST: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAAGGTGEST: gi|208387236|gb|DC945535.1|DC945535
genomic: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAA---Ggtgccaaatg ... ttcgttgt
EST: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAAGGTGEST: gi|208387236|gb|DC945535.1|DC945535
genomic: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAA---Ggtgccaaatg ... ttcgttgt
EST: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAAGGTGEST: gi|208387236|gb|DC945535.1|DC945535
genomic: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAA---Ggtgccaaatg ... ttcgttgt
EST: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAAGGTGEST: gi|208355402|gb|DC949868.1|DC949868
genomic: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAA---Ggtgccaaatg ... ttcgttgt
EST: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAAG ACTGAAGAGCAAACAGTGCGTACTTTTCTCCATTCATTGGGACTAGAGAAAEST: gi|162205376|gb|FC382085.1|FC382085
genomic: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAAGgtgccaaatg ... ttcgttgtagACTGAAGAGCAAACAGTGCGTACTTTTCTCCATTCATTGGGACTAGAGAAA
EST: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTATGGATGGAAAG ACTGAAGAGCAAACAGTGCGTACTTTTCTCCATTCATTGGGACTAGAGAAAEST: gi|162212065|gb|FC388175.1|FC388175
genomic: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAAGgtgccaaatg ... ttcgttgtagACTGAAGAGCAAACAGTGCGTACTTTTCTCCATTCATTGGGACTAGAGAAA
EST: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTATGGATGGAAAG ACTGAAGAGCAAACAGTGCGTACTTTTCTCCATTCATTGGGACTAGAGAAAEST: gi|67699739|gb|BJ959972.1|BJ959972
genomic: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAAGgtgccaaatg ... ttcgttgtagACTGAAGAGCAAACAGTGCGTACTTTTCTCCATTCATTGGGACTAGAGAAA
EST: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAAG ACTGAAGAGCAAACAGTGCGTACTTTTCTCCATTCATTGGGACTAGAGAAAEST: gi|18336346|gb|BJ168368.1|BJ168368
genomic: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAAGgtgccaaatg ... ttcgttgtagACTGAAGAGCAAACAGTGCGTACTTTTCTCCATTCATTGGGACTAGAGAAA
EST: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAAG ACTGAAGAGCAAACAGTGCGTACTTTTCTCCATTCATTGGGACTAGAGAAAEST: gi|162250136|gb|FC427445.1|FC427445
genomic: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAAGgtgccaaatg ... ttcgttgtagACTGAAGAGCAAACAGTGCGTACTTTTCTCCATTCATTGGGACTAGAGAAA
EST: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTATGGATGGAAAG ACTGAAGAGCAAACAGTGCGTACTTTTCTCCATTCATTGGGACTAGAGAAAEST: gi|162156407|gb|FC332639.1|FC332639
genomic: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAAGgtgccaaatg ... ttcgttgtagACTGAAGAGCAAACAGTGCGTACTTTTCTCCATTCATTGGGACTAGAGAAA
EST: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTATGGATGGAAAGGTGEST: gi|162156407|gb|FC332639.1|FC332639
genomic: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAA---Ggtgccaaatg ... ttcgttgt
EST: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTATGGATGGAAAGGTGEST: gi|162156407|gb|FC332639.1|FC332639
genomic: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAA---Ggtgccaaatg ... ttcgttgt
EST: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTATGGATGGAAAGGTGEST: gi|162156407|gb|FC332639.1|FC332639
genomic: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAA---Ggtgccaaatg ... ttcgttgt
EST: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTATGGATGGAAAGGTGEST: gi|162156407|gb|FC332639.1|FC332639
genomic: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAA---Ggtgccaaatg ... ttcgttgt
EST: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTATGGATGGAAAGGTGEST: gi|162156407|gb|FC332639.1|FC332639
genomic: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAA---Ggtgccaaatg ... ttcgttgt
EST: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTATGGATGGAAAGGTGEST: gi|162156407|gb|FC332639.1|FC332639
genomic: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAA---Ggtgccaaatg ... ttcgttgt
EST: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTATGGATGGAAAGGTGEST: gi|162156408|gb|FC332640.1|FC332640
genomic: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAA---Ggtgccaaatg ... ttcgttgt
EST: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTATGGATGGAAAGGTGEST: gi|162156408|gb|FC332640.1|FC332640
genomic: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAA---Ggtgccaaatg ... ttcgttgt
EST: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTATGGATGGAAAGGTGEST: gi|162156408|gb|FC332640.1|FC332640
genomic: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAA---Ggtgccaaatg ... ttcgttgt
EST: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTATGGATGGAAAGGTGEST: gi|162156408|gb|FC332640.1|FC332640
genomic: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAA---Ggtgccaaatg ... ttcgttgt
EST: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTATGGATGGAAAGGTGEST: gi|162156408|gb|FC332640.1|FC332640
genomic: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAA---Ggtgccaaatg ... ttcgttgt
EST: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTATGGATGGAAAGGTGEST: gi|162156408|gb|FC332640.1|FC332640
genomic: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAA---Ggtgccaaatg ... ttcgttgt
EST: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTATGGATGGAAAGGTGEST: gi|162156408|gb|FC332640.1|FC332640
genomic: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAA---Ggtgccaaatg ... ttcgttgt
EST: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTATGGATGGAAAGGTG
genomic: CTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAA---Ggtgccaaatg ... ttcgttgt
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATGGCACAAGTGCTACGCAAGGTGCGGCTTCAACAGCAGTCCCTGCCCCTGTCTCAGCCAGATCGGTTGCAACTGTAAAAAGACCTGTGGATGGAAAGgtgccaaatgtaatttcttctttgtaacgagacttgcagattccattctcagcgtttacaagtcttgtatttttgttggtcttcagagtcttcagttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA