1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttttttttttatatatatatatatatatatatatatatatatctgagcatatgttttgaagttgaatcgctaatctagaccgtatgttacgaactcgcagGGACAAATGTGCGTAGCCGGATCACGGACATTTGTTCATGAAAGTGTCTATGACGAATATCTGGAGCGAGCCAAAGCCCGTGCGGAGAAGCGTGTTGTCG
species | Physcomitrella patens |
transcript | PP1S93_81V6.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACATGGACGCAGCTGTTGAATCAGCACACCAAGCTATTTTCTACAATCAG GGACAAATGTGCGTAGCCGGATCACGGACATTTGTTCATGAAAGTGTCTATEST: gi|162162108|gb|FC338899.1|FC338899
genomic: ACATGGACGCAGCTGTTGAATCAGCACACCAAGCTATTTTCTACAATCAGgtgtgaagtc ... gaactcgcagGGACAAATGTGCGTAGCCGGATCACGGACATTTGTTCATGAAAGTGTCTAT
EST: TTTTCTACAATCAG GGACAAATGTGCGTAGCCGGATCACGGACATTTGTTCATGAAAGTGTCTATEST: gi|100376854|gb|BY949497.1|BY949497
genomic: TTTTCTACAATCAGgtgtgaagtc ... gaactcgcagGGACAAATGTGCGTAGCCGGATCACGGACATTTGTTCATGAAAGTGTCTAT
EST: ACATGGACGCAGCTGTTGAATCAGCACACCAAGCTATTTTCTACAATCAG GGACAAATGTGCGTAGCCGGATCACGGACATTTGTCCATGAAAGTGTCTAT
genomic: ACATGGACGCAGCTGTTGAATCAGCACACCAAGCTATTTTCTACAATCAGgtgtgaagtc ... gaactcgcagGGACAAATGTGCGTAGCCGGATCACGGACATTTGTTCATGAAAGTGTCTAT
agcatatgttttgaagttgaatcgctaatctagaccgtatgttacgaactcgcagGGACAAATGTGCGTAGCCGGATCACGGACATTTGTTCATGAAAGTGTCTATGACGAATATCTGGAGCGAGCCAAAGCCCGTGCGGAGAAGCGTGTTGTCG
cgctaat putative branch site (score: 12)
atgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttttttttatatatatatatatatatatatatatatatatctgagcatatgttttgaagttgaatcgctaatctagaccgtatgttacgaactcgcagGGACAAATGTGCGTAGCCGGATCACGGACATTTGTTCATGAAAGTGTCTATGACGAATATCTGGAGCGAGCCAAAGCCCGTGCGGAGAAGCGTGTTGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC