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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtatacatctgcctgttccgcgttgtgctgcctatttcattgtgctaagggaatttcgtcaatcactgaactagaggtaaacccactgatacttttgttatcgatggcagGTATGGTGTATGGAAACTTCGGGAACACTGTTTAGACGCCATGGCAGCAAACTTCGAATTTTTTTCCGGGATCCCGGAATTTAGGCAAATGCTCTTGTGC

Basic information

species Physcomitrella patens
transcript PP1S93_72V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162226426|gb|FC403537.1|FC403537
EST:     GAAACGGCCTCTCCAGCTGATTTATGTGGCTGGCTCCTTTTGGCTGACAA                         GTATGGTGTATGGAAACTTCGGGAACACTGTTTAGACGCCATGGCAGCAAA
genomic: GAAACGGCCTCTCCAGCTGATTTATGTGGCTGGCTCCTTTTGGCTGACAAgtaagtgtat ... tcgatggcagGTATGGTGTATGGAAACTTCGGGAACACTGTTTAGACGCCATGGCAGCAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgtcaatcactgaactagaggtaaacccactgatacttttgttatcgatggcagGTATGGTGTATGGAAACTTCGGGAACACTGTTTAGACGCCATGGCAGCAAACTTCGAATTTTTTTCCGGGATCCCGGAATTTAGGCAAATGCTCTTGTGC
                            cactgat  putative branch site (score: 3)
                                     ttttgttat  TA-rich tract