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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCCCGTACCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAGgtattaacataatgtatttagatatgtgaggccatttatgtggatcttcatttgttcgcagcttaattccacgagaggattctgtgattgtcctgtagcg...

Basic information

species Physcomitrella patens
transcript PP1S93_67V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208348153|gb|DC920944.1|DC920944
EST:     CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAG                         CAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
genomic: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAGgtattaacat ... ggttttacagCAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
EST: gi|37836462|gb|BJ594470.1|BJ594470
EST:     TTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAG                         CAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
genomic: TTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAGgtattaacat ... ggttttacagCAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
EST: gi|208384568|gb|DC907069.1|DC907069
EST:     CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAG                         CAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
genomic: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAGgtattaacat ... ggttttacagCAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
EST: gi|208398893|gb|DC920841.1|DC920841
EST:     CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAG                         CAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
genomic: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAGgtattaacat ... ggttttacagCAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
EST: gi|208375976|gb|DC906967.1|DC906967
EST:     CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAG                         CAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
genomic: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAGgtattaacat ... ggttttacagCAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
EST: gi|208387152|gb|DC945451.1|DC945451
EST:     CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAG                         CAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
genomic: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAGgtattaacat ... ggttttacagCAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
EST: gi|208366273|gb|DC947531.1|DC947531
EST:     CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAG                         CAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
genomic: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAGgtattaacat ... ggttttacagCAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
EST: gi|18336673|gb|BJ168696.1|BJ168696
EST:     CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAG                         CAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
genomic: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAGgtattaacat ... ggttttacagCAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
EST: gi|100426838|gb|BY977388.1|BY977388
EST:     CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAG                         CAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
genomic: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAGgtattaacat ... ggttttacagCAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
EST: gi|18357094|gb|BJ189153.1|BJ189153
EST:     CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAG                         CAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
genomic: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAGgtattaacat ... ggttttacagCAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
EST: gi|208373033|gb|DC948798.1|DC948798
EST:     CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAG                         CAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
genomic: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAGgtattaacat ... ggttttacagCAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
EST: gi|22491833|gb|BU051756.1|BU051756
EST:     CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAG                         CAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT
genomic: CCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAGgtattaacat ... ggttttacagCAAGTATCTAATGAGTTCAAGGCCACCTTGGAGCAAGAAATAGGTCTAGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGCCCGTACCTTGGGCAAGTCGCTGCGGGCATTTCAACCGACGATTAAGGAGCTCCAGgtattaacataatgtatttagatatgtgaggccatttatgtggatcttcatttgttcgcagcttaattccacgagaggattctgtgattgtcctgtagcg

- - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT