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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTTACGGGCCCGAATCATGATAACTTTGGAGAGTTTACAAGGAATCTGTGACGAATCCCCAGGTGGGAAGTAGCTAGAAATTTGCAGACTCCCTTGGgtaatggttgcaccattccacgatctcaccttctctaattgtttccgatttcctagattcataactaggacattagaatcagctatctcttccccctcaatggaaagactcggcggcgcaggcaacacaacttcttattggactcccttgatggaaatggattcattttcttgatatgtgtacgtttgtgtatgtgacag

Basic information

species Physcomitrella patens
transcript PP1S93_56V6.6
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100426570|gb|BY977296.1|BY977296
EST:     GTGACGAATCCCCAGGTGGGAAGTAGCTAGAAATTTGCAGACTCCCTTGG                         TGTTGAACTCCGAGACGACCCAGTTTTAAAAGAAAGGGGATGAGGCAGGAG
genomic: GTGACGAATCCCCAGGTGGGAAGTAGCTAGAAATTTGCAGACTCCCTTGGgtaatggttg ... tatgtgacagTGTTGAACTCCGAGACGACCCAGTTTTAAAAGAAAGGGGATGAGGCAGGAG
EST: gi|100449999|gb|CJ974043.1|CJ974043
EST:     GTGACGAATCCCCAGGTGGGAAGTAGCTAGAAATTTGCAGACTCCCTTGG                         TGTTGAACTCCGAGACGACCCAGTTTTAAAAGAAAGGGGATGAGGCAGGAG
genomic: GTGACGAATCCCCAGGTGGGAAGTAGCTAGAAATTTGCAGACTCCCTTGGgtaatggttg ... tatgtgacagTGTTGAACTCCGAGACGACCCAGTTTTAAAAGAAAGGGGATGAGGCAGGAG
EST: gi|100439244|gb|BY980166.1|BY980166
EST:     GTGACGAATCCCCAGGTGGGAAGTAGCTAGAAATTTGCAGACTCCCTTGG                         TGTTGAACTCCCGAGACGACCCAGTTTTTAAAAGAAAGGGGATGAGGCAGG
genomic: GTGACGAATCCCCAGGTGGGAAGTAGCTAGAAATTTGCAGACTCCCTTGGgtaatggttg ... tatgtgacagTGTTGAACTCC-GAGACGACCCAGTTTT-AAAAGAAAGGGGATGAGGCAGG