1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaatgtaatcccaaactagagccacttgaactgagctttgtctcaagatggttagacttattcaactaccctcaaaattgagtcatggataatgcactgattatgaagcttggcactgaaacagGAGTGACAGCCTACAGTGTAGACTTCCATGGTCAGCAGGTGACAGTCACAGGATTAGTCACTCCCGAGGATGTTTATCGACACGTCTCTCGAACAGGCAA
species | Physcomitrella patens |
transcript | PP1S93_56V6.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGCGAGGGATGTGCTCGGACTGTCAAGCGAGCTGTCAAGCGAATCCCGG GAGTGACAGCCTACAGTGTAGACTTCCATGGTCAGCAGGTGACAGTCACEST: gi|67718133|gb|BJ968392.1|BJ968392
genomic: TTGCGAGGGATGTGCTCGGACTGTCAAGCGAGCTGTCAAGCGAATCCCGGgtaatgtaat ... actgaaacagGAGTGACAGCCTACAGTGTAGACTTCCATGGTCAGCAGGTGACAGTCAC
EST: TTGCGAGGGATGTGCTCGGACTGTCAAGCGAGCTGTCAAGCGAATCCCGG GAGTGACAGCCTACAGTGTAGACTTCCATGGTCAGCAGGTGACAGTCACAGEST: gi|67717017|gb|BJ967276.1|BJ967276
genomic: TTGCGAGGGATGTGCTCGGACTGTCAAGCGAGCTGTCAAGCGAATCCCGGgtaatgtaat ... actgaaacagGAGTGACAGCCTACAGTGTAGACTTCCATGGTCAGCAGGTGACAGTCACAG
EST: TTGCGAGGGATGTGCTCGGACTGTCAAGCGAGCTGTCAAGCGAATCCCGG GAGTGACAGCCTACAGTGTAGACTTCCATGGTCAGCAGGTGACAGTCACAGEST: gi|100377463|gb|BY968534.1|BY968534
genomic: TTGCGAGGGATGTGCTCGGACTGTCAAGCGAGCTGTCAAGCGAATCCCGGgtaatgtaat ... actgaaacagGAGTGACAGCCTACAGTGTAGACTTCCATGGTCAGCAGGTGACAGTCACAG
EST: TTGCGAGGGATGTGCTCGGACTGTCAAGCGAGCTGTCAAGCGAATCCCGG GAGTGACAGCCTACAGTGTAGACTTCCATGGTCAGCAGGTGACAGTCACAG
genomic: TTGCGAGGGATGTGCTCGGACTGTCAAGCGAGCTGTCAAGCGAATCCCGGgtaatgtaat ... actgaaacagGAGTGACAGCCTACAGTGTAGACTTCCATGGTCAGCAGGTGACAGTCACAG
cctcaaaattgagtcatggataatgcactgattatgaagcttggcactgaaacagGAGTGACAGCCTACAGTGTAGACTTCCATGGTCAGCAGGTGACAGTCACAGGATTAGTCACTCCCGAGGATGTTTATCGACACGTCTCTCGAACAGGCAA
cactgat putative branch site (score: 16)
attatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgtaatcccaaactagagccacttgaactgagctttgtctcaagatggttagacttattcaactaccctcaaaattgagtcatggataatgcactgattatgaagcttggcactgaaacagGAGTGACAGCCTACAGTGTAGACTTCCATGGTCAGCAGGTGACAGTCACAGGATTAGTCACTCCCGAGGATGTTTATCGACACGTCTCTCGAACAGGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG