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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctagacggtgatcaagttgcttgttgtcgttggtattcaatcaacctcagggactcttgttcttaagtgataagctaattgctatgtgatatgaatgcagATAATGGCCGAGGTACAGACTTTGGTGATTCAAACAGTGATTCTTAAGGTAGTTCTTCATTGCGAGGGATGTGCTCGGACTGTCAAGCGAGCTGTCAAGC

Basic information

species Physcomitrella patens
transcript PP1S93_56V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208391513|gb|DC937661.1|DC937661
EST:     ACAGAATCGTATTCTATTACTTCCCACCTATACGAAGAATTTATACACAA                         ATAATGGCCGAGGTACAGACTTTGGTGATTCAAACAGTGATTCTTAAGGTA
genomic: ACAGAATCGTATTCTATTACTTCCCACCTATACGAAGAATTTATACACAAgtactgcttc ... atgaatgcagATAATGGCCGAGGTACAGACTTTGGTGATTCAAACAGTGATTCTTAAGGTA
EST: gi|100373635|gb|BY967754.1|BY967754
EST:     ACAGAATCGTATTCTATTACTTCCCACCTATACGAAGAATTTATACACAA                         ATAATGGCCGAGGTACAGACTTTGGTGATTCAAACAGTGATTCTTAAGGTA
genomic: ACAGAATCGTATTCTATTACTTCCCACCTATACGAAGAATTTATACACAAgtactgcttc ... atgaatgcagATAATGGCCGAGGTACAGACTTTGGTGATTCAAACAGTGATTCTTAAGGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcagggactcttgttcttaagtgataagctaattgctatgtgatatgaatgcagATAATGGCCGAGGTACAGACTTTGGTGATTCAAACAGTGATTCTTAAGGTAGTTCTTCATTGCGAGGGATGTGCTCGGACTGTCAAGCGAGCTGTCAAGC
                           agctaat  putative branch site (score: 3)
                                           atatgaat  TA-rich tract