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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAGAAAACTTTAGAGGGTGCAGCTTGTGGCCTAAGTTCATCAATTGCTGTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAGgtaaaaatattttgcaagtggttttcaaggattggaaaagtctggaaaccgtacattctcgtggatatagcttagtcaaaatcttggtatagtttcaaag...

Basic information

species Physcomitrella patens
transcript PP1S93_52V6.3
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162177736|gb|FC354570.1|FC354570
EST:     GTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAG                         CGCGGCGGTGATGGCGGTACTTGTTTTTCTGGGGTCCCTGTTCGGTGACTT
genomic: GTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAGgtaaaaatat ... atgcacgcagCGCGGCGGTGATGGCGGTACTTGTTTTTCTGGGGTCCCTGTTCGGTGACTT
EST: gi|37821610|gb|BJ579676.1|BJ579676
EST:     GTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAG                         CGCGGCGGTGATGGCGGTACTTGTTTTTCTGGGGTCCCTGTTCGGTGACTT
genomic: GTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAGgtaaaaatat ... atgcacgcagCGCGGCGGTGATGGCGGTACTTGTTTTTCTGGGGTCCCTGTTCGGTGACTT
EST: gi|162189407|gb|FC366565.1|FC366565
EST:     GTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAG                         CGCGGCGGTGATGGCGGTACTTGTTTTTCTGGGGTCCCTGTTCGGTGACTT
genomic: GTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAGgtaaaaatat ... atgcacgcagCGCGGCGGTGATGGCGGTACTTGTTTTTCTGGGGTCCCTGTTCGGTGACTT
EST: gi|162189408|gb|FC366566.1|FC366566
EST:     GTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAG                         CGCGGCGGTGATGGCGGTACTTGTTTTTCTGGGGTCCCTGTTCGGTGACTT
genomic: GTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAGgtaaaaatat ... atgcacgcagCGCGGCGGTGATGGCGGTACTTGTTTTTCTGGGGTCCCTGTTCGGTGACTT
EST: gi|18336268|gb|BJ168290.1|BJ168290
EST:     GTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAG                         CGCGGCGGTGATGGCGGTACTTGTTTTTCTGGGGTCCCTGTTCGGTGACTT
genomic: GTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAGgtaaaaatat ... atgcacgcagCGCGGCGGTGATGGCGGTACTTGTTTTTCTGGGGTCCCTGTTCGGTGACTT
EST: gi|16137533|gb|BI894397.1|BI894397
EST:     GTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAG                         CGCGGCGGTGATGGCGGTACTTGGTTTTTCTGGGGTCCCTGTTCGGTGACT
genomic: GTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAGgtaaaaatat ... atgcacgcagCGCGGCGGTGATGGCGGTACTTG-TTTTTCTGGGGTCCCTGTTCGGTGACT
EST: gi|37844818|gb|BJ602826.1|BJ602826
EST:     GTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAG                         CGCGGCGGTGATGGCGGTACTTGTTTTTCTGGGGTCCCTGTTCGGTGACTT
genomic: GTATCCGTGGTGCTTGCTCGCGTTTTTCAATGGCCCATGTCTATTCCCAGgtaaaaatat ... atgcacgcagCGCGGCGGTGATGGCGGTACTTGTTTTTCTGGGGTCCCTGTTCGGTGACTT