1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...caaatttctttctctttcattgtttctaagagtatctcctctgtggaacctctcctttgaatctacgaacgaaacggtgccgttggaatgatatgaatagAATTCGCCTCAGCGTGGCCTGCGCTGCTCGGAGGACAGGCTCACTGGACAGTGGGCCTGATAGCTACCATCATGGCCATTAGCACCATAATAGCTGCAGA
species | Physcomitrella patens |
transcript | PP1S93_52V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCCATTCCTGCTATC-ATACCCA AATTCGCCTCAGCGTGGCCTGCGCTGCTCGGAGGACAGGCTCACTGGACAEST: gi|100390486|gb|BY952894.1|BY952894
genomic: TGCCATTCCTGCTATCAATA-CCAgtaagtgtat ... atatgaatagAATTCGCCTCAGCGTGGCCTGCGCTGCTCGGAGGACAGGCTCACTGGACA
EST: CTTCTGGATAAAGTTGCGTTGTGGCCTTGCCATTCCTGCTATCAATACCA AATTCGCCTCAGCGTGGCCTGCGCTGCTCGGAGGACAGGCTCACTGGACAGEST: gi|162189407|gb|FC366565.1|FC366565
genomic: CTTCTGGATAAAGTTGCGTTGTGGCCTTGCCATTCCTGCTATCAATACCAgtaagtgtat ... atatgaatagAATTCGCCTCAGCGTGGCCTGCGCTGCTCGGAGGACAGGCTCACTGGACAG
EST: TTCTGGATAAAGTTGCGTTGTGGCCTTGCCATTCCTGCTATCAATACCA AATTCGCCTCAGCGTGGCCTGCGCTGCTCGGAGGACAGGCTCACTGGACAGEST: gi|162189408|gb|FC366566.1|FC366566
genomic: TTCTGGATAAAGTTGCGTTGTGGCCTTGCCATTCCTGCTATCAATACCAgtaagtgtat ... atatgaatagAATTCGCCTCAGCGTGGCCTGCGCTGCTCGGAGGACAGGCTCACTGGACAG
EST: CTTCTGGATAAAGTTGCGTTGTGGCCTTGCCATTCCTGCTATCAATACCA AATTCGCCTCAGCGTGGCCTGCGCTGCTCGGAGGACAGGCTCACTGGACAG
genomic: CTTCTGGATAAAGTTGCGTTGTGGCCTTGCCATTCCTGCTATCAATACCAgtaagtgtat ... atatgaatagAATTCGCCTCAGCGTGGCCTGCGCTGCTCGGAGGACAGGCTCACTGGACAG
gaacctctcctttgaatctacgaacgaaacggtgccgttggaatgatatgaatagAATTCGCCTCAGCGTGGCCTGCGCTGCTCGGAGGACAGGCTCACTGGACAGTGGGCCTGATAGCTACCATCATGGCCATTAGCACCATAATAGCTGCAGA
atatgaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaatttctttctctttcattgtttctaagagtatctcctctgtggaacctctcctttgaatctacgaacgaaacggtgccgttggaatgatatgaatagAATTCGCCTCAGCGTGGCCTGCGCTGCTCGGAGGACAGGCTCACTGGACAGTGGGCCTGATAGCTACCATCATGGCCATTAGCACCATAATAGCTGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG