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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcctgtaagtgagggtgagattgttgtattcttgtgtcaatttcagcattttgcgtcgatgcggaaacaccagctaatcgtcagaaacaccttattccagGTTTGTGTATACAAGGACGGGAAGGTCATCATTGACACTGCGGGGGGAGTACTTGGAAAGTTCGATCCAAGACCAGTTCAGCCGGATAGCTTATTCTCTT

Basic information

species Physcomitrella patens
transcript PP1S93_33V6.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162184660|gb|FC361898.1|FC361898
EST:     GGGAATTATTGCTTAACTTGGGGCGGGAGGACTCGATCCTAGGTGTTCAA                         GTTTGTGTATACAAGGACGGGAAGGTCATCATTGACACTGCGGGGGGAGTA
genomic: GGGAATTATTGCTTAACTTGGGGCGGGAGGACTCGATCCTAGGTGTTCAGgttcgttttt ... cttattccagGTTTGTGTATACAAGGACGGGAAGGTCATCATTGACACTGCGGGGGGAGTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcattttgcgtcgatgcggaaacaccagctaatcgtcagaaacaccttattccagGTTTGTGTATACAAGGACGGGAAGGTCATCATTGACACTGCGGGGGGAGTACTTGGAAAGTTCGATCCAAGACCAGTTCAGCCGGATAGCTTATTCTCTT
                          agctaat  putative branch site (score: 3)
                                            ccttattcc  putative PPT
                                              ttatt  TA-rich tract