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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaccacacttgcaaaagaatatcatgtgacacgttgcttgcttgcattaacatgaattcatgccatgtcttaacaatcatatcttctaattcgtaataagttctaatgctctcatgctgatgatatgcgtgtgtatgtgcgggaaattgcagATACATCCGAACTTGACTGAGCACGAGAGGAAGAGGCTGTGCCGAATCTTAAACTGCCATCGTCTCTCACTGGATGCCTGCACGCATGCTTCCCAGAACG

Basic information

species Physcomitrella patens
transcript PP1S93_32V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S93_32V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: LOC_Os02g35970.1 (Oryza sativa), 3'ss of exon 5
gttaccacacttgcaaaagaatatcatgtgacacgttgcttgcttgcattaacatgaattcatgccatgtcttaacaatcatatcttctaattcgtaataagttctaatgctctcatgctgatgatatgcgtgtgtatgtgcgggaaattgcagATACATCCGAACTTGACTGAGCACGAGAGGAAGAGGCTGTGCCGAATCTTAAACTGCCATCGTCTCTCACTGGATGCCTGCACGCATGCTTCCCAGAACG
                                                                        |||| | || ||  |  |  | |   ||  |||   || ||    || |  | ||   | |       |     | ||||||   || ||||   |||| |||||||||||||||||||||||| |  |  |  |||||||    || ||  | || || |||| ||| ||  | |||||||
-----------------------------------------------------------------------gtaactagcacat--tacagctagc--tagtttccggtgatc----gccggagttaatggcgatcgatcg-----atttgcagGCGCACCCGACGCTGACGGAGCACGAGAGGAAGAGGCTGTGCAGGGTGATGGACTGCCAGAAGCTGTCGTTCGACGCGTGCATGCACGCGGCGCAGAACG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttctaatgctctcatgctgatgatatgcgtgtgtatgtgcgggaaattgcagATACATCCGAACTTGACTGAGCACGAGAGGAAGAGGCTGTGCCGAATCTTAAACTGCCATCGTCTCTCACTGGATGCCTGCACGCATGCTTCCCAGAACG
                      atgatat  TA-rich tract