1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cgtacttcgcaatatgttgctgctctaacgttgttagtatgttcaaagtaagtcctgttccacaagaatcctgtactaatattgatgatttgtctactagTGTGGATGCTCGAGATCGGTGGCACCTATCAAGGCTGGTTTCGTTGCCTTGGTTGGACGTCGGAAGGCAACTACTTAGGGTTCATGAGTGGAGTTTCAAG
species | Physcomitrella patens |
transcript | PP1S93_178V6.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACACCATCCTTACCAAGGAGAACCGTTTGTTCTTTCTTCGTTGTGAGCAG TGTGGATGCTCGAGATCGGTGGCACCTATCAAGGCTGGTTTCGTTGCCTTGEST: gi|162250609|gb|FC428200.1|FC428200
genomic: ACACCATCCTTACCAAGGAGAACCGTTTGTTCTTTCTTCGTTGTGAGCAGgtgtgtaatc ... tgtctactagTGTGGATGCTCGAGATCGGTGGCACCTATCAAGGCTGGTTTCGTTGCCTTG
EST: ACACCATCCTTACCAAGGAGAACCGTTTGTTCTTTCTTCGTTGTGAGCAG TGTGGATGCTCGAGATCGGTGGCACCTATCAAGGCTGGTTTCGTTGCCTTGEST: gi|208388404|gb|DC957042.1|DC957042
genomic: ACACCATCCTTACCAAGGAGAACCGTTTGTTCTTTCTTCGTTGTGAGCAGgtgtgtaatc ... tgtctactagTGTGGATGCTCGAGATCGGTGGCACCTATCAAGGCTGGTTTCGTTGCCTTG
EST: ACACCATCCTTACCAAGGAGAACCGTTTGTTCTTTCTTCGTTGTGAGCAG TGTGGATGCTCGAGATCGGTGGCACCTATCAAGGCTGGTTTCGTTGCCTTGEST: gi|208383473|gb|DC923625.1|DC923625
genomic: ACACCATCCTTACCAAGGAGAACCGTTTGTTCTTTCTTCGTTGTGAGCAGgtgtgtaatc ... tgtctactagTGTGGATGCTCGAGATCGGTGGCACCTATCAAGGCTGGTTTCGTTGCCTTG
EST: ACACCATCCTTACCAAGGAGAACCGTTTGTTCTTTCTTCGTTGTGAGCAG TGTGGATGCTCGAGATCGGTGGCACCTATCAAGGCTGGTTTCGTTGCCTTGEST: gi|18333977|gb|BJ165993.1|BJ165993
genomic: ACACCATCCTTACCAAGGAGAACCGTTTGTTCTTTCTTCGTTGTGAGCAGgtgtgtaatc ... tgtctactagTGTGGATGCTCGAGATCGGTGGCACCTATCAAGGCTGGTTTCGTTGCCTTG
EST: ACACCATCCTTACCAAGGAGAACCGTTTGTTCTTTCTTCGTTGTGAGCAG TGTGGATGCTCGAGATCGGTGGCACCTATCAAGGCTGGTTTCGTTGCCTTGEST: gi|162250610|gb|FC428201.1|FC428201
genomic: ACACCATCCTTACCAAGGAGAACCGTTTGTTCTTTCTTCGTTGTGAGCAGgtgtgtaatc ... tgtctactagTGTGGATGCTCGAGATCGGTGGCACCTATCAAGGCTGGTTTCGTTGCCTTG
EST: ACACCATCCTTACCAAGGAGAACCGTTTGTTCTTTCTTCGTTGTGAGCAG TGTGGATGCTCGAGATCGGTGGCACCTATCAAGGCTGGTTTCGTTGCCTTG
genomic: ACACCATCCTTACCAAGGAGAACCGTTTGTTCTTTCTTCGTTGTGAGCAGgtgtgtaatc ... tgtctactagTGTGGATGCTCGAGATCGGTGGCACCTATCAAGGCTGGTTTCGTTGCCTTG
aagtaagtcctgttccacaagaatcctgtactaatattgatgatttgtctactagTGTGGATGCTCGAGATCGGTGGCACCTATCAAGGCTGGTTTCGTTGCCTTGGTTGGACGTCGGAAGGCAACTACTTAGGGTTCATGAGTGGAGTTTCAAG
tttgtct CT-rich tract
taatattgatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtacttcgcaatatgttgctgctctaacgttgttagtatgttcaaagtaagtcctgttccacaagaatcctgtactaatattgatgatttgtctactagTGTGGATGCTCGAGATCGGTGGCACCTATCAAGGCTGGTTTCGTTGCCTTGGTTGGACGTCGGAAGGCAACTACTTAGGGTTCATGAGTGGAGTTTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - -tgctgct