1 5' 3' | 2 5' 3' | 3 5' 3' |
...ggttgcattccttgagacgattttatggttgcaacagaacgttgtgtgatttgtgggttgacgcggcgttttattttataagtttcttctactactgcagGATTGTGTTAGCACCACTTACCAGATGTCGATCATACCACACTATACCGCAACCATCACATGCTGCGCTCTATTACGCGCAACGCACCACACGCGGGGGG
species | Physcomitrella patens |
transcript | PP1S93_177V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGCCCTTGTTGTCTCCTTACCAGCTGGGTCCTTTCAAGCTTTCTCACAG GATTGTGTTAGCACCACTTACCAGATGTCGATCATACCACACTATACCGCAEST: gi|100388425|gb|BY952027.1|BY952027
genomic: AAGCCCTTGTTGTCTCCTTACCAGCTGGGTCCTTTCAAGCTTTCTCACAGgttgggagct ... actactgcagGATTGTGTTAGCACCACTTACCAGATGTCGATCATACCACACTATACCGCA
EST: AAGCCCTTGTTGTCTCCTTACCAGCTGGGTCCTTTCAAGCTTTCTCACAG GATTGTGTTAGCACCACTTACCAGATGTCGATCATACCACACTATACCGCAEST: gi|100422910|gb|BY958060.1|BY958060
genomic: AAGCCCTTGTTGTCTCCTTACCAGCTGGGTCCTTTCAAGCTTTCTCACAGgttgggagct ... actactgcagGATTGTGTTAGCACCACTTACCAGATGTCGATCATACCACACTATACCGCA
EST: AAGCCCTTGTTGTCTCCTTACCAGCTGGGTCCTTTCAAGCTTTCTCACAG GATTGTGTTAGCACCACTTACCAGATGTCGATCATACCACACTATACCGCAEST: gi|18348004|gb|BJ180051.1|BJ180051
genomic: AAGCCCTTGTTGTCTCCTTACCAGCTGGGTCCTTTCAAGCTTTCTCACAGgttgggagct ... actactgcagGATTGTGTTAGCACCACTTACCAGATGTCGATCATACCACACTATACCGCA
EST: AAGCCCTTGTTGTCTCCTTACCAGCTGGGTCCTTTCAAGCTTTCTCACAG GATTGTGTTAGCACCACTTACCAGATGTCGATCATACCACACTATACCGCAEST: gi|67508059|gb|BJ940931.1|BJ940931
genomic: AAGCCCTTGTTGTCTCCTTACCAGCTGGGTCCTTTCAAGCTTTCTCACAGgttgggagct ... actactgcagGATTGTGTTAGCACCACTTACCAGATGTCGATCATACCACACTATACCGCA
EST: AAGCCCTTGTTGTCTCCTTACCAGCTGGGTCCTTTCAAGCTTTCTCACAG GATTGTGTTAGCACCACTTACCAGATGTCGATCATACCACACTATACCGCAEST: gi|67572574|gb|BJ945398.1|BJ945398
genomic: AAGCCCTTGTTGTCTCCTTACCAGCTGGGTCCTTTCAAGCTTTCTCACAGgttgggagct ... actactgcagGATTGTGTTAGCACCACTTACCAGATGTCGATCATACCACACTATACCGCA
EST: AAGCCCTTGTTGTCTCCTTACCAGCTGGGTCCTTTCAAGCTTTCTCACAG GATTGTGTTAGCACCACTTACCAGATGTCGATCATACCACACTATACCGCAEST: gi|162164250|gb|FC342065.1|FC342065
genomic: AAGCCCTTGTTGTCTCCTTACCAGCTGGGTCCTTTCAAGCTTTCTCACAGgttgggagct ... actactgcagGATTGTGTTAGCACCACTTACCAGATGTCGATCATACCACACTATACCGCA
EST: AAGCCCTTGTTGTCTCCTTACCAGCTGGGTCCTTTCAAGCTTTCTCACAG GATTGTGTTAGCACCACTTACCAGATGTCGATCATACCACACTATACCGCA
genomic: AAGCCCTTGTTGTCTCCTTACCAGCTGGGTCCTTTCAAGCTTTCTCACAGgttgggagct ... actactgcagGATTGTGTTAGCACCACTTACCAGATGTCGATCATACCACACTATACCGCA
gtgatttgtgggttgacgcggcgttttattttataagtttcttctactactgcagGATTGTGTTAGCACCACTTACCAGATGTCGATCATACCACACTATACCGCAACCATCACATGCTGCGCTCTATTACGCGCAACGCACCACACGCGGGGGG
ggttgac putative branch site (score: 4)
tttcttctactact putative PPT
ttttattttataagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggttgcattccttgagacgattttatggttgcaacagaacgttgtgtgatttgtgggttgacgcggcgttttattttataagtttcttctactactgcagGATTGTGTTAGCACCACTTACCAGATGTCGATCATACCACACTATACCGCAACCATCACATGCTGCGCTCTATTACGCGCAACGCACCACACGCGGGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC