1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AACAAGCTGGAGAAACTTGCGCTCGCGTGCTGAATGCGCTTGGAACTGTAATTAAGCGAACGTTAGGATATTCGACGTTTAGTTTCTCAAGAGTTGAAAGgtattgggcatgttgagacgaacttggcaaatttttagaaagacaacggaaccgtcaaccagaaagaagaaaaaaataaaaaaataaaaaaatgtcacct...
species | Physcomitrella patens |
transcript | PP1S93_151V6.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATTAAGCGAACGTTAGGATATTCGACGTTTAGTTTCTCAAGAGTTGAAAG TGAAAGGTTACACTCCCCCAGGAGGTTTTTATTATTGATGTAGACGGAGCTEST: gi|18357924|gb|BJ189983.1|BJ189983
genomic: ATTAAGCGAACGTTAGGATATTCGACGTTTAGTTTCTCAAGAGTTGAAAGgtattgggca ... ttttctgcagTGAAAGGTTACACTCCCCCAGGAGGTTTTTATTATTGATGTAGACGGAGCT
EST: ATTAAGCGAACGTTAGGATATTCGACGTTTAGTTTCTCAAGAGTTGAAAG TGAAAGGTTACACTCCCCCAGGAGGTTTTTATTATTGATGTAGACGGAGCT
genomic: ATTAAGCGAACGTTAGGATATTCGACGTTTAGTTTCTCAAGAGTTGAAAGgtattgggca ... ttttctgcagTGAAAGGTTACACTCCCCCAGGAGGTTTTTATTATTGATGTAGACGGAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACAAGCTGGAGAAACTTGCGCTCGCGTGCTGAATGCGCTTGGAACTGTAATTAAGCGAACGTTAGGATATTCGACGTTTAGTTTCTCAAGAGTTGAAAGgtattgggcatgttgagacgaacttggcaaatttttagaaagacaacggaaccgtcaaccagaaagaagaaaaaaataaaaaaataaaaaaatgtcacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaaaa