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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgttgcttccttgtccagcttgacaataccatggatcaggttctcaaccttggaacatatctggcacgtgaaatccttgtcttagtgaagatgaattcacaatactcaaaaaagtgtctgtaaccattcctgcagAAGTCTCTCCATTGAGCCCTCCCATGCATGGATGTGAAGCAAGGGTGGGGTCGCATGTGAAAACGTCGAAAGGCAAGTTGTGGCCCACTTTCCATCGAGT

Basic information

species Physcomitrella patens
transcript PP1S93_151V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37837287|gb|BJ595295.1|BJ595295
EST:     NNNNNNACCCCGCACTTTTGCTAGTGCCCCCGAACACAAGAAAAAANCTG                         AAGTCTCTCCATTGAGCCCTCCCATGCATGGATGTGAAGCAAGGGTGGGGT
genomic: TTTTTTACCCCGCACTTTTGCTAGTGCCCCCGAACACAAGAAAAAAACTGgtaagtgttg ... attcctgcagAAGTCTCTCCATTGAGCCCTCCCATGCATGGATGTGAAGCAAGGGTGGGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttagtgaagatgaattcacaatactcaaaaaagtgtctgtaaccattcctgcagAAGTCTCTCCATTGAGCCCTCCCATGCATGGATGTGAAGCAAGGGTGGGGTCGCATGTGAAAACGTCGAAAGGCAAGTTGTGGCCCACTTTCCATCGAGT
                                     ctgtaac  putative branch site (score: 3)
                                           ccattcct  CT-rich tract
                         tcaaaaaa  TA-rich tract