1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtctatagattctacggtagacttctttcatacgctcgggttctctgcaatgctagttgtatggctagattttctgcctctcacaacttgtattttccagGAAAGCCATGGAAGGACAAAGTCAGAGCTCCACAGAACTGAGGAAATGCTAAGCTCGTCACTTTCCGGAGTAGCATCATTGGAACAATCTTTGAGCAACG
species | Physcomitrella patens |
transcript | PP1S93_148V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGCAGATGAAGTTTGGAAAGTCCTAAAGGATAATTTGAACAAGATGCGG GAAAGCCATGGAAGGACAAAGTCAGAGCTCCACAGAACTGAGGAAATGCTAEST: gi|162270471|gb|FC447587.1|FC447587
genomic: AAGCAGATGAAGTTTGGAAAGTCCTAAAGGATAATTTGAACAAGATGCGGgtgagtgtat ... tattttccagGAAAGCCATGGAAGGACAAAGTCAGAGCTCCACAGAACTGAGGAAATGCTA
EST: AAGCAGATGAAGTTTGGAAAGTCCTAAAGGATAATTTGAACAAGATGCGG GAAAGCCATGGAAGGACAAAGTCAGAGCTCCACAGAACTGAGGAAATGCTAEST: gi|162198477|gb|FC375312.1|FC375312
genomic: AAGCAGATGAAGTTTGGAAAGTCCTAAAGGATAATTTGAACAAGATGCGGgtgagtgtat ... tattttccagGAAAGCCATGGAAGGACAAAGTCAGAGCTCCACAGAACTGAGGAAATGCTA
EST: AAGCAGATGAAGTTTGGAAAGTCCTAAAGGATAATTTGAACAAGATGCGG GAAAGCCATGGAAGGACAAAGTCAGAGCTCCACAGAACTGAGGAAATGCTA
genomic: AAGCAGATGAAGTTTGGAAAGTCCTAAAGGATAATTTGAACAAGATGCGGgtgagtgtat ... tattttccagGAAAGCCATGGAAGGACAAAGTCAGAGCTCCACAGAACTGAGGAAATGCTA
tgcaatgctagttgtatggctagattttctgcctctcacaacttgtattttccagGAAAGCCATGGAAGGACAAAGTCAGAGCTCCACAGAACTGAGGAAATGCTAAGCTCGTCACTTTCCGGAGTAGCATCATTGGAACAATCTTTGAGCAACG
ctctcac putative branch site (score: 3)
tattttcc putative PPT
ttgtatttt TA-rich tract