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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggctggattggggaactggttaagtttgaagatacgggggtgcgggttgttgtattacttgtttctatggccgttgcgacgtggatcgtgataggggaatttatatatatatatatatatatatatatatatcgaaggtttacatgagctgaggttgtgggtgtgttatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAACATTGCTGATTTCGAAGATCCGTGAGGAGTATCCCGATAGGATGATGCT

Basic information

species Physcomitrella patens
transcript PP1S93_136V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100397039|gb|BY953954.1|BY953954
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|100411608|gb|BY992249.1|BY992249
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|67719337|gb|BJ969596.1|BJ969596
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|100432716|gb|BY978712.1|BY978712
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGGA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|208397135|gb|DC908149.1|DC908149
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|100400532|gb|BY954524.1|BY954524
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|208346335|gb|DC912770.1|DC912770
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|208387065|gb|DC941237.1|DC941237
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|67718788|gb|BJ969047.1|BJ969047
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGANAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|100390373|gb|BY952781.1|BY952781
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|100393030|gb|BY989724.1|BY989724
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAAGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|100442220|gb|BY981244.1|BY981244
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|100430264|gb|BY959782.1|BY959782
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|100446246|gb|CJ970545.1|CJ970545
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|100358659|gb|BY965758.1|BY965758
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGA-CCGGATCGGGGATGGGA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGA
EST: gi|67710297|gb|BJ965960.1|BJ965960
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|100442953|gb|BY963448.1|BY963448
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         -TTTTCAAGTATGTCACTCTTT
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTT
EST: gi|18325887|gb|BJ157885.1|BJ157885
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGA
EST: gi|100395328|gb|BY953682.1|BY953682
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|208390437|gb|DC933694.1|DC933694
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|100424775|gb|BY976809.1|BY976809
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|208361434|gb|DC930403.1|DC930403
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|162163539|gb|FC339449.1|FC339449
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|18373412|gb|BJ204990.1|BJ204990
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAAGGAGGAACCGGATCGGGGGATGGG
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGA-GGAGGAACCGGATCGGGG-ATGGG
EST: gi|100439930|gb|BY980310.1|BY980310
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|100421755|gb|BY993628.1|BY993628
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|67717192|gb|BJ967451.1|BJ967451
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGGGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|100422489|gb|BY976399.1|BY976399
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|100372542|gb|BY985649.1|BY985649
EST:     CGTGTTGGATGTGGCGCGAAAGGAGGCTGAAAGCTGGGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGAT
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGAT
EST: gi|208388022|gb|DC933142.1|DC933142
EST:     CGTGTTGGATGTGGTGCGAAAGGAGACTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGGGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|100387767|gb|BY951767.1|BY951767
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|162189889|gb|FC366099.1|FC366099
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|100427910|gb|BY959187.1|BY959187
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCCGGATCGGG-ATGGGA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACC-GGATCGGGGATGGGA
EST: gi|67716816|gb|BJ967075.1|BJ967075
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|100391025|gb|BY953035.1|BY953035
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|208356528|gb|DC938653.1|DC938653
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|208375316|gb|DC940454.1|DC940454
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|100440537|gb|BY962248.1|BY962248
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTCTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
EST: gi|67717234|gb|BJ967493.1|BJ967493
EST:     CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAG                         GTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA
genomic: CGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 30 (upstream exon), 9 (downstream exon)
Score: 5

AACAACTGGGCCAAGGGGCATTACACGGAGGGAGCTGAGCTGATTGATTCCGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctgg ... tatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAACATTGCTGATTTCGAAGATCCGTGAGGAGTATCCCGATAGGATGATGCT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatatatatcgaaggtttacatgagctgaggttgtgggtgtgttatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAACATTGCTGATTTCGAAGATCCGTGAGGAGTATCCCGATAGGATGATGCT
                                          tgttattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatggctggattggggaactggttaagtttgaagatacgggggtgcgggttgttgtattacttgtttctatggccgttgcgacgtggatcgtgataggggaatttatatatatatatatatatatatatatatatcgaaggtttacatgagctgaggttgtgggtgtgttatttggcagGTTTTCAAGTATGTCACTCTTTGGGAGGAGGAACCGGATCGGGGATGGGAACATTGCTGATTTCGAAGATCCGTGAGGAGTATCCCGATAGGATGATGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG