Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208368845|gb|DC947403.1|DC947403EST: TCAGGATCCCCAAACCTGGGAGAAACTCAAAGCTACATTGCGACCTGGAG GGAGAATCATAGTTAATTGTGGCGGTGATCGACTAATACCTGGACAAGAGA
genomic: TCAGGATCCCCAAACCTGGGAGAAACTCAAAGCTACATTGCGACCTGGAGgtaattcttt ... gaacctgcagGGAGAATCATAGTTAATTGTGGCGGTGATCGACTAATACCTGGACAAGAGA
EST:
gi|18339641|gb|BJ171668.1|BJ171668EST: TCAGGATCCCCAAACCTGGGAGAAACTCAAAGCTACATTGCGACCTGGAG GGAGAATCATAGTTAATTGTGGCGGTGATCGACTAATACCTGGACAAGAGA
genomic: TCAGGATCCCCAAACCTGGGAGAAACTCAAAGCTACATTGCGACCTGGAGgtaattcttt ... gaacctgcagGGAGAATCATAGTTAATTGTGGCGGTGATCGACTAATACCTGGACAAGAGA
EST:
gi|162258987|gb|FC435930.1|FC435930EST: TCAGGATCCCCAAACCTGGGAGAAACTCANAGCTACATTGCGACCTGGAG GGAGAATCATAGTTAATTGTGGCGGTGATCGACTAATACCTGGACAAGAGA
genomic: TCAGGATCCCCAAACCTGGGAGAAACTCAAAGCTACATTGCGACCTGGAGgtaattcttt ... gaacctgcagGGAGAATCATAGTTAATTGTGGCGGTGATCGACTAATACCTGGACAAGAGA
EST:
gi|208378353|gb|DC923024.1|DC923024EST: TCAGGATCCCCAAACCTGGGAGAAACTCAAAGCTACATTGCGACCTGGAG GGAGAATCATAGTTAATTGTGGCGGTGATCGACTAATACCTGGACAAGAGA
genomic: TCAGGATCCCCAAACCTGGGAGAAACTCAAAGCTACATTGCGACCTGGAGgtaattcttt ... gaacctgcagGGAGAATCATAGTTAATTGTGGCGGTGATCGACTAATACCTGGACAAGAGA
EST:
gi|162149628|gb|FC325845.1|FC325845EST: TCAGGATCCCCAAACCTGGGAGAAACTCAAAGCTACATTGCGACCTGGAG GGAGAATCATAGTTAATTGTGGCGGTGATCGACTAATACCTGGACAAGAGA
genomic: TCAGGATCCCCAAACCTGGGAGAAACTCAAAGCTACATTGCGACCTGGAGgtaattcttt ... gaacctgcagGGAGAATCATAGTTAATTGTGGCGGTGATCGACTAATACCTGGACAAGAGA
EST:
gi|162153018|gb|FC330048.1|FC330048EST: TCAGGATCCCCAAACCTGGGAGAAACTCAAAGCTACATTGCGACCTGGAG GGAGAATCATAGTTAATTGTGGCGGTGATCGACTAATACCTGGACAAGAGA
genomic: TCAGGATCCCCAAACCTGGGAGAAACTCAAAGCTACATTGCGACCTGGAGgtaattcttt ... gaacctgcagGGAGAATCATAGTTAATTGTGGCGGTGATCGACTAATACCTGGACAAGAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCAAGCTTGATTGTTGATCTGTTTGCAGAAGGACGCGTCATTCCTGCTCTTCAGGATCCCCAAACCTGGGAGAAACTCAAAGCTACATTGCGACCTGGAGgtaattctttcgcactctgcacacacctttaaactcttcaaaacctcgtcccgtttcttcaaaatccctcctaacgtctctttctttatttgaagagtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA