1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttttaactgcgtatttcttctcgtgtcactcgtgatcatttttccaattgatcgaacattgttatgtgagtctcagcttctgtaataccttgttttgcagATTATAAGTAGCGTTGATGCAGAAGCGCAAGCAATGGAGGAGGAATTGGCGTCTGCGAGGGCTCAAATGGAAGCCGACAGCCGGGAATTCGACGAATTTG
species | Physcomitrella patens |
transcript | PP1S93_122V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATAAAATCGCTCAAGATGCCATGGGGAAGATGGACGAAGCAAGCTCCAAG ATTACAAGTAGCGTTGATGCAGAAGCGCAAGCAATGAAGGAAGGA-TTGGCEST: gi|100389685|gb|BY952491.1|BY952491
genomic: ATAAAATCGCTCAAGATGCCATGGGGAAGATGGACGAAGCAAGCTCCAAGgtactaatcc ... tgttttgcagATTATAAGTAGCGTTGATGCAGAAGCGCAAGCAATGGAGGA-GGAATTGGC
EST: ATAAAATCGCTCAAGATGCCATGGGGAAGATGGACGAAGCAAGCTCCAAG ATT-TACAGTAGCGTTGATGCAGAAGCGCAAGCAATGGAGGAGGAATTGGCEST: gi|208352347|gb|DC906158.1|DC906158
genomic: ATAAAATCGCTCAAGATGCCATGGGGAAGATGGACGAAGCAAGCTCCAAGgtactaatcc ... tgttttgcagATTATA-AGTAGCGTTGATGCAGAAGCGCAAGCAATGGAGGAGGAATTGGC
EST: ATAAAATCGCTCAAGATGCCATGGGGAAGATGGACGAAGCAAGCTCCAAG ATTATAAGTAGCGTTGATGCANAAGCGCAAGCAATGGANGAGNAATNGGCG
genomic: ATAAAATCGCTCAAGATGCCATGGGGAAGATGGACGAAGCAAGCTCCAAGgtactaatcc ... tgttttgcagATTATAAGTAGCGTTGATGCAGAAGCGCAAGCAATGGAGGAGGAATTGGCG
aattgatcgaacattgttatgtgagtctcagcttctgtaataccttgttttgcagATTATAAGTAGCGTTGATGCAGAAGCGCAAGCAATGGAGGAGGAATTGGCGTCTGCGAGGGCTCAAATGGAAGCCGACAGCCGGGAATTCGACGAATTTG
aattgat putative branch site (score: 8)
ccttgtttt putative PPT
attgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttaactgcgtatttcttctcgtgtcactcgtgatcatttttccaattgatcgaacattgttatgtgagtctcagcttctgtaataccttgttttgcagATTATAAGTAGCGTTGATGCAGAAGCGCAAGCAATGGAGGAGGAATTGGCGTCTGCGAGGGCTCAAATGGAAGCCGACAGCCGGGAATTCGACGAATTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG