1 5' 3' | 2 5' 3' | 3 5' 3' |
GACTTTCTCCAACGCAATAAGATGCAACAGCACCTGCCCCGGACCACTTCTCAGCTGGTCTAGGTTGCTTCCCATCAGGCCTGTCCAGTTCTCCAAGCTGgtatgcaatagactacctctctatctctcacagttatgttagattgcttcttcagtttccaatcttgtccattaagcctgcttttccgctcagtgactgc...
species | Physcomitrella patens |
transcript | PP1S93_117V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCAGCTGGTCTAGGTTGCTTCCCATCAGGCCTGTCCAGTTCTCCAAGCTG GTGGAGGAGTTGGTAATGATTTGAATTGCAATGGATAGAAAGAAAGCGTTCEST: gi|18357097|gb|BJ189156.1|BJ189156
genomic: TCAGCTGGTCTAGGTTGCTTCCCATCAGGCCTGTCCAGTTCTCCAAGCTGgtatgcaata ... ttcgatgcagGTGGAGGAGTTGGTAATGATTTGAATTGCAATGGATAGAAAGAAAGCGTTC
EST: TCAGCTGGTCTAGGTTGCTTCCCATCAGGCCTGTCCAGTTCTCCAAGCTG GTGGAGGAGTTGGTAATGATTTGAATTGCAATGGATAGAAAGAAAGCGTTCEST: gi|208384552|gb|DC915024.1|DC915024
genomic: TCAGCTGGTCTAGGTTGCTTCCCATCAGGCCTGTCCAGTTCTCCAAGCTGgtatgcaata ... ttcgatgcagGTGGAGGAGTTGGTAATGATTTGAATTGCAATGGATAGAAAGAAAGCGTTC
EST: TCAGCTGGTCTAGGTTGCTTCCCATCAGGCCTGTCCAGTTCTCCAAGCTG GTGGAGGAGTTGGTAATGATTTGAATTGCAATGGATAGAAAGAAAGCGTTCEST: gi|100430610|gb|BY978306.1|BY978306
genomic: TCAGCTGGTCTAGGTTGCTTCCCATCAGGCCTGTCCAGTTCTCCAAGCTGgtatgcaata ... ttcgatgcagGTGGAGGAGTTGGTAATGATTTGAATTGCAATGGATAGAAAGAAAGCGTTC
EST: TCAGCTGGTCTAGGTTGCTTCCCATCAGGCCTGTCCAGTTCTCCAAGCTG GTGGAGGAGTTGGTAATGATTTGAATTGCAATGGATAGAAAGAAAGCGTTCEST: gi|100389880|gb|BY971232.1|BY971232
genomic: TCAGCTGGTCTAGGTTGCTTCCCATCAGGCCTGTCCAGTTCTCCAAGCTGgtatgcaata ... ttcgatgcagGTGGAGGAGTTGGTAATGATTTGAATTGCAATGGATAGAAAGAAAGCGTTC
EST: TCAGCTGGTCTAGGTTGCTTCCCATCAGGCCTGTCCAGTTCTCCAAGCTG GTGGAGGAGTTGGTAATGATTTGAATTGCAATGGATAGAAAGAAAGCGTTCEST: gi|100400222|gb|BY954369.1|BY954369
genomic: TCAGCTGGTCTAGGTTGCTTCCCATCAGGCCTGTCCAGTTCTCCAAGCTGgtatgcaata ... ttcgatgcagGTGGAGGAGTTGGTAATGATTTGAATTGCAATGGATAGAAAGAAAGCGTTC
EST: TCAGCTGGTCTAGGTTGCTTCCCATCAGGCCTGTCCAGTTCTCCAAGCTG GTGGAGGAGTTGGTAATGATTTGAATTGCAATGGATAGAAAGAAAGCGTTCEST: gi|18354382|gb|BJ186438.1|BJ186438
genomic: TCAGCTGGTCTAGGTTGCTTCCCATCAGGCCTGTCCAGTTCTCCAAGCTGgtatgcaata ... ttcgatgcagGTGGAGGAGTTGGTAATGATTTGAATTGCAATGGATAGAAAGAAAGCGTTC
EST: TCAGCTGGTCTAGGTTGCTTCCCATCAGGCCTGTCCAGTTCTCCAAGCTG GTGGAGGAGTTGGTAATGATTTGAATTGCAATGGATAGAAAGAAAGCGTTCEST: gi|18354634|gb|BJ186692.1|BJ186692
genomic: TCAGCTGGTCTAGGTTGCTTCCCATCAGGCCTGTCCAGTTCTCCAAGCTGgtatgcaata ... ttcgatgcagGTGGAGGAGTTGGTAATGATTTGAATTGCAATGGATAGAAAGAAAGCGTTC
EST: TCAGCTGGTCTAGGTTGCTTCCCATCAGGCCTGTCCAGTTCTCCAAGCTG GTGGAGGAGTTGGTAATGATTTGAATTGCAATGGATAGAAAGAAAGCGTTC
genomic: TCAGCTGGTCTAGGTTGCTTCCCATCAGGCCTGTCCAGTTCTCCAAGCTGgtatgcaata ... ttcgatgcagGTGGAGGAGTTGGTAATGATTTGAATTGCAATGGATAGAAAGAAAGCGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTTTCTCCAACGCAATAAGATGCAACAGCACCTGCCCCGGACCACTTCTCAGCTGGTCTAGGTTGCTTCCCATCAGGCCTGTCCAGTTCTCCAAGCTGgtatgcaatagactacctctctatctctcacagttatgttagattgcttcttcagtttccaatcttgtccattaagcctgcttttccgctcagtgactgc
- - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG