1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgattattgacatgcttttgtttacacactatcgtaatttctcactaatatgccaccttgtatgagtggtgatagtcacagtattgacatttttgtccagGTGATCGCAGAATCCAAGAGCGGCTCCAACAGCTATTTGTGCTTCCCAGACCATTTCTGTTCCTGTCAATCTTTCTTCTTCGACGTGGTTTCCAGAAGCG
species | Physcomitrella patens |
transcript | PP1S92_62V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGTGTGCAACATGTTGTTTCTCATCCCAGTCAGCGTTCCGTCTTTCAG GTGATCGCAGAATCCAAGAGCGGCTCCAACAGCTATTTGTGCTTCCCAGACEST: gi|162249951|gb|FC427052.1|FC427052
genomic: AGGTGTGCAACATGTTGTTTCTCATCCCAGTCAGCGTTCCGTCTTTCAGgtttgtgcta ... ttttgtccagGTGATCGCAGAATCCAAGAGCGGCTCCAACAGCTATTTGTGCTTCCCAGAC
EST: GAGGTGTGCAACATGTTGTTTCTCATCCCAGTCAGCGTTCCGTC--T--- -T--T--CAGAATCCAAGAGCGGCTCCAACAGCTATTTGTGCTTCCCAGACEST: gi|208397308|gb|DC920662.1|DC920662
genomic: GAGGTGTGCAACATGTTGTTTCTCATCCCAGTCAGCGTTCCGTCTTTCAGgtttgtgcta ... ttttgtccagGTGATCGCAGAATCCAAGAGCGGCTCCAACAGCTATTTGTGCTTCCCAGAC
EST: GAGGTGTGCAACATGTTGTTTCTCATCCCAGTCAGCGTTCCGTC--T--- -T--T--CAGAATCCAAGAGCGGCTCCAACAGCTATTTGTGCTTCCCAGACEST: gi|18328125|gb|BJ160129.1|BJ160129
genomic: GAGGTGTGCAACATGTTGTTTCTCATCCCAGTCAGCGTTCCGTCTTTCAGgtttgtgcta ... ttttgtccagGTGATCGCAGAATCCAAGAGCGGCTCCAACAGCTATTTGTGCTTCCCAGAC
EST: GAGGTGTGCAACATGTTGTTTCTCATCCCAGTCAGCGTTCCGTCTTTCAG GTGATCGCAGAATCCAAGAGCGGCTCCAACAGCTATTTGTGCTTCCCAGACEST: gi|162249950|gb|FC427051.1|FC427051
genomic: GAGGTGTGCAACATGTTGTTTCTCATCCCAGTCAGCGTTCCGTCTTTCAGgtttgtgcta ... ttttgtccagGTGATCGCAGAATCCAAGAGCGGCTCCAACAGCTATTTGTGCTTCCCAGAC
EST: GAGGTGTGCAACATGTTGTTTCTCATCCCAGTCAGCGTTCCGTC--T--- -T--T--CAGAATCCAAGAGCGGCTCCAACAGCTATTTGTGCTTCCCAGAC
genomic: GAGGTGTGCAACATGTTGTTTCTCATCCCAGTCAGCGTTCCGTCTTTCAGgtttgtgcta ... ttttgtccagGTGATCGCAGAATCCAAGAGCGGCTCCAACAGCTATTTGTGCTTCCCAGAC
taatatgccaccttgtatgagtggtgatagtcacagtattgacatttttgtccagGTGATCGCAGAATCCAAGAGCGGCTCCAACAGCTATTTGTGCTTCCCAGACCATTTCTGTTCCTGTCAATCTTTCTTCTTCGACGTGGTTTCCAGAAGCG
tattgac putative branch site (score: 1)
tttttgtcc CT-rich tract
acattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgattattgacatgcttttgtttacacactatcgtaatttctcactaatatgccaccttgtatgagtggtgatagtcacagtattgacatttttgtccagGTGATCGCAGAATCCAAGAGCGGCTCCAACAGCTATTTGTGCTTCCCAGACCATTTCTGTTCCTGTCAATCTTTCTTCTTCGACGTGGTTTCCAGAAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - gacatgc