1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gaattttatttggtgctgcatctgtctgctttttcttctaacacagtatagtctgggtctacttctcagacactcactcatccatctactttgagtacagCATTTTGACGTAGAGAATTACAAGGGCGTGGTGGACGCCCGCATGGCAGTGGACGCGGTGTAAGCGTTCGCACTAGGGTAGTATTCACAGTTCTGAGATG
species | Physcomitrella patens |
transcript | PP1S92_5V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCTGGTATGGTTTCAACCTTTGAAGTTAGATGTTGACGCTGTACATAAAG CATTTTGACGTAGAGAATTACAAGGGCGTGGTGGACGCCCGCATGGCAGTGEST: gi|208380741|gb|DC919443.1|DC919443
genomic: CCTGGTATGGTTTCAACCTTTGAAGTTAGATGTTGACGCTGTACATAAAGgtcagaaccg ... ttgagtacagCATTTTGACGTAGAGAATTACAAGGGCGTGGTGGACGCCCGCATGGCAGTG
EST: CCTGGTATGGTTTCAACCTTTGAAGTTAGATGTTGACGCTGTACATAAAG CATTTTGACGTAGAGAATTACAAGGGCGTGGTGGACGCCCGCATGGCAGTG
genomic: CCTGGTATGGTTTCAACCTTTGAAGTTAGATGTTGACGCTGTACATAAAGgtcagaaccg ... ttgagtacagCATTTTGACGTAGAGAATTACAAGGGCGTGGTGGACGCCCGCATGGCAGTG
gtatagtctgggtctacttctcagacactcactcatccatctactttgagtacagCATTTTGACGTAGAGAATTACAAGGGCGTGGTGGACGCCCGCATGGCAGTGGACGCGGTGTAAGCGTTCGCACTAGGGTAGTATTCACAGTTCTGAGATG
cactcac putative branch site (score: 1)
tctacttt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaattttatttggtgctgcatctgtctgctttttcttctaacacagtatagtctgggtctacttctcagacactcactcatccatctactttgagtacagCATTTTGACGTAGAGAATTACAAGGGCGTGGTGGACGCCCGCATGGCAGTGGACGCGGTGTAAGCGTTCGCACTAGGGTAGTATTCACAGTTCTGAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - -tgctgca