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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGTCGAAGTGATGGCACCCGTCTTTTCCAAGGCCGCCTGGCGTTGCGTTTGGTATATGATCCAGgtactcataacatatcgttggcgaaaatgccttattttgtgtttctgtcactacaaatcagctgctgttcttattttctaatggttccttagattcaaag...

Basic information

species Physcomitrella patens
transcript PP1S92_48V6.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S92_48V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA18G47640.1 (Glycine max), 5'ss of exon 8
ATTTGTCGAAGTGATGGCACCCGTCTTTTCCAAGGCCGCCTGGCGTTGCGTTTGGTATATGATCCAGgtactcataacatatcgttggcgaaaatgccttattttgtgtttctgtcactacaaatcagctgctgttcttattttctaatggttccttagattcaaag
 |  || ||| ||||||| || || || || |  || || ||||||||||||||||||||||||||||| | |  |   | || ||   |||  |  ||  |   |  || || | |      || |  |  | |  | ||  | |   | || |||   || | ||
GTGGGTTGAAATGATGGCTCCTGTTTTCTCAAGAGCTGCTTGGCGTTGCGTTTGGTATATGATCCAGgtgcac-cattctctcatt--tgaatgttactgctgaagcattactatta-----gattactttatttattcatcatttgtggtttactttattttacag

upper sequence: PP1S92_48V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA09G38690.2 (Glycine max), 5'ss of exon 6
ATTTGTCGAAGTGATGGCACCCGTCTTTTCCAAGGCCGCCTGGCGTTGCGTTTGGTATATGATCCAGgtac-------tcataacatatcgttggcgaaaatgccttattttgtgt-ttctgtcactacaaatcagctgctgttcttattttctaatggttccttagattcaaag
 |  || ||| ||||||| || || || || |  || || ||||||||| ||||||||||||||||||| |       ||  |   ||  |||   |   | |  ||| | |     ||   |  ||| | || |  |  | |  | |   |  |  | || |||   || | ||
GTGGGTTGAAATGATGGCTCCTGTTTTCTCAAGAGCTGCTTGGCGTTGCATTTGGTATATGATCCAGgtgcacccttctctcattttaatgttactgctgaagaattactataaacattgctttgcta-agattactttatttattcaccattcatggtttactttattttacag

upper sequence: PP1S92_48V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA09G38690.1 (Glycine max), 5'ss of exon 6
ATTTGTCGAAGTGATGGCACCCGTCTTTTCCAAGGCCGCCTGGCGTTGCGTTTGGTATATGATCCAGgt--actcataacatatcgttggcgaaaatgcctta--ttttgtgtttctgtcactacaaatcagctgctgttcttattttctaatggttccttagattcaaag
 |  || ||| ||||||| || || || || |  || || ||||||||| |||||||||||||||||||  || | |  |  ||  ||   |  | |||   |   ||  | |     |  ||          | || |  |||||  | | |  |   |||  ||     
GTGGGTTGAAATGATGGCTCCTGTTTTCTCAAGAGCTGCTTGGCGTTGCATTTGGTATATGATCCAGgtgcacccttctctcatt-ttaatgttactgctgaagaattactataaacattgctttgctaagattactttatttattcaccattcatggtttactttat---

upper sequence: PP1S92_48V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: Vv12s0035g01350.t01 (Vitis vinifera), 5'ss of exon 10
ATTTGTCGAAGTGATGGCACCCGTCTTTTCCAAGGCCGCCTGGCGTTGCGTTTGGTATATGATCCAGgtactcataacatatcgttggcgaaaatgcctta-ttttgtgtttctgtcactacaaatcagctgctgttcttattttctaatggttccttagattcaaag----
 |  || ||| |||||||||| ||||| || ||||| |||||||| || || ||| ||||||||||||||   |  || | || ||      | |||   | | ||||||  ||     |  |       |  ||    |  |  | ||||       ||||    ||    
TTGGGTGGAAATGATGGCACCTGTCTTCTCAAAGGCAGCCTGGCGATGTGTGTGGCATATGATCCAGgtat--aggacct-tcattaaattgagtgctcaagtattgtgtggctaatggttgagg--gatttttgcaaattatagcaaatgaactagaagatagtgagggtg