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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtcttttgcagcagtcgccttgttttcaattgttcacttgaggaaaattgagagttgttttctttgacgattgaccgattcggtgtgttgaaattgcagATGAAAAGAGATGCTATAGCAAACACGGTTTATGAAGCTATGCCAAATCCATCCGAGCATAAGTACACTAAGCTTTTTACTTGTTTAATTTAAATTTATC

Basic information

species Physcomitrella patens
transcript PP1S92_44V6.3
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162278423|gb|FC454509.1|FC454509
EST:     CCGATGCGACGCATGTGCATTATATTGGATTACGTGGAGAAGCTACACAA                         ATGAAAAGAGATGCTATAGCAAACACGGTTTATGAAGCTATGCCAAATCCA
genomic: CCGATGCGACGCATGTGCATTATATTGGATTACGTGGAGAAGCTACACAAgtgagcagtt ... gaaattgcagATGAAAAGAGATGCTATAGCAAACACGGTTTATGAAGCTATGCCAAATCCA
EST: gi|67578191|gb|BJ950358.1|BJ950358
EST:     CCGATGCGACGCATGTGCATTATATTGGATTACGTGGAGAAGCTACACAA                         ATGAAAAGAGATGCTATAGCAAACACGGTTTATGAAGCTATGCCA
genomic: CCGATGCGACGCATGTGCATTATATTGGATTACGTGGAGAAGCTACACAAgtgagcagtt ... gaaattgcagATGAAAAGAGATGCTATAGCAAACACGGTTTATGAAGCTATGCCA
EST: gi|162201174|gb|FC377681.1|FC377681
EST:     CCGATGCGACGCATGTGCATTATATTGGATTACGTGGAGAAGCTACACAA                         ATGAAAAGAGATGCTATAGCAAACACGGTTTATGAAGCTATGCCAAATCCA
genomic: CCGATGCGACGCATGTGCATTATATTGGATTACGTGGAGAAGCTACACAAgtgagcagtt ... gaaattgcagATGAAAAGAGATGCTATAGCAAACACGGTTTATGAAGCTATGCCAAATCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattgagagttgttttctttgacgattgaccgattcggtgtgttgaaattgcagATGAAAAGAGATGCTATAGCAAACACGGTTTATGAAGCTATGCCAAATCCATCCGAGCATAAGTACACTAAGCTTTTTACTTGTTTAATTTAAATTTATC
                        gattgac  putative branch site (score: 3)
             ttttcttt  TA-rich tract