Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctttttccctctcgcctcttcggttgcaaaagtgaattagcggtgtttgagctgtaatttttaggaccggattagatagcattgtttcgaagactactgtgtgatctgacatgatcaactttgtttgtttttgtggaaagGTGACGGACTTTAAGAAACTGCTGAAGAATTATGTGAAGGAACTAGATGAGGAATCTCCTTTCGACTCAGAGAAACATCCATTTATCAAGCAGTTTAGAG

Basic information

species Physcomitrella patens
transcript PP1S92_30V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18329133|gb|BJ161139.1|BJ161139
EST:     ACAGCAAAGCCCTAGAAACGTTAAGTATGACATATGCACCGTCCATTGAG                         GTGACGGACTTTAAGAAACTGCTGAAGAATTATGTGAAGGAACTAGATGAG
genomic: ACAGCAAAGCCCTAGAAACGTTAAGTATGACATATGCACCGTCCATTGAGgtatcttttt ... ttgtggaaagGTGACGGACTTTAAGAAACTGCTGAAGAATTATGTGAAGGAACTAGATGAG
EST: gi|18369127|gb|BJ201212.1|BJ201212
EST:     ACAGCAAAGCCCTAGAAACGTTAAGTATGACATATGCACCGTCCATTGAG                         GTGACGGACTTTAAGAAACTGCTGAAGAATTATGTGAAGGAACTAGATGAG
genomic: ACAGCAAAGCCCTAGAAACGTTAAGTATGACATATGCACCGTCCATTGAGgtatcttttt ... ttgtggaaagGTGACGGACTTTAAGAAACTGCTGAAGAATTATGTGAAGGAACTAGATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgaagactactgtgtgatctgacatgatcaactttgtttgtttttgtggaaagGTGACGGACTTTAAGAAACTGCTGAAGAATTATGTGAAGGAACTAGATGAGGAATCTCCTTTCGACTCAGAGAAACATCCATTTATCAAGCAGTTTAGAG
                  atctgac  putative branch site (score: 3)
                                 ctttgtttgttttt  putative PPT
                                      tttgttttt  TA-rich tract