1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgtgcacccttccgatggcgtgcaattttggcggagggagtggtagaagctgagtgtgcgatttggtgtgactcggaagaatgctgtgaaaggtattttgtacagttaacaagtgtgttgtgtgattccgtggacaagcagTTGTGTGGTGCACGAGGCGGTGGTGATGCAGCCGCGCGGAGCTTGTATTGGGTGGCGAACAAGAGCCTTACCTTCATGCTGGTGTTGGACTCGGAGCGAG
species | Physcomitrella patens |
transcript | PP1S92_105V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCAAGGGCCGGCACAACCGAGCAAAAGAAGAATACTCTTCGTCTATGCAG TTGTGTGGTGCACGAGGCGGTGGTGATGCAGCCGCGCGGAGCTTGTATTGGEST: gi|162154728|gb|FC331666.1|FC331666
genomic: TCAAAGGCCGGCACAACCGAGCAAAAGAAGAATACTCTTCGTCTATGCAGgtgtgcaccc ... ggacaagcagTTGTGTGGTGCACGAGGCGGTGGTGATGCAGCCGCGCGGAGCTTGTATTGG
EST: TCAAAGGCCGGCACAACCGAGCAAAAGAAGAATACTCTTCGTCTATGCAG TTGTGTGGTGCACGAGGCGGTGGTGATGCAGCCGCGCGGAGCTTGTATTGGEST: gi|208367814|gb|DC944060.1|DC944060
genomic: TCAAAGGCCGGCACAACCGAGCAAAAGAAGAATACTCTTCGTCTATGCAGgtgtgcaccc ... ggacaagcagTTGTGTGGTGCACGAGGCGGTGGTGATGCAGCCGCGCGGAGCTTGTATTGG
EST: TCAAAGGCCGGCACAACCGAGCAAAAGAAGAATACTCTTCGTCTATGCAG TTGTGTGGTGCACGAGGCGGTGGTGATGCAGCCGCGCGGAGCTTGTATTGG
genomic: TCAAAGGCCGGCACAACCGAGCAAAAGAAGAATACTCTTCGTCTATGCAGgtgtgcaccc ... ggacaagcagTTGTGTGGTGCACGAGGCGGTGGTGATGCAGCCGCGCGGAGCTTGTATTGG
tgaaaggtattttgtacagttaacaagtgtgttgtgtgattccgtggacaagcagTTGTGTGGTGCACGAGGCGGTGGTGATGCAGCCGCGCGGAGCTTGTATTGGGTGGCGAACAAGAGCCTTACCTTCATGCTGGTGTTGGACTCGGAGCGAG
agttaac putative branch site (score: 24)
tattttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgcacccttccgatggcgtgcaattttggcggagggagtggtagaagctgagtgtgcgatttggtgtgactcggaagaatgctgtgaaaggtattttgtacagttaacaagtgtgttgtgtgattccgtggacaagcagTTGTGTGGTGCACGAGGCGGTGGTGATGCAGCCGCGCGGAGCTTGTATTGGGTGGCGAACAAGAGCCTTACCTTCATGCTGGTGTTGGACTCGGAGCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG