1 5' 3' | 2 5' 3' |
TCTTCCCTTTCGAAGTTGCTTTCTGCCCACTAAAGACTACACAGCATTGTCATGTGCTGCGGCTACTCAAGCCGATCAGCTGAGTTGCAGCTTTTCCCTGgtaagctctgtgaatttaagtatcgatttattgaatatgtctgcccaagaaagaaggctttctttttctttctattctgtcacacaattggattgctttt...
species | Physcomitrella patens |
transcript | PP1S91_94V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CATGTGCTGCGGCTACTCAAGCCGATCAGCTGAGTTGCAGCTTTTCCCTG GCCTCTTCTGCTTGGATGGGTTTGGTAGGTCTGTACACATAACTGCATGCAEST: gi|18357221|gb|BJ189280.1|BJ189280
genomic: CATGTGCTGCGGCTACTCAAGCCGATCAGCTGAGTTGCAGCTTTTCCCTGgtaagctctg ... tgttttgcagGCCTCTTCTGCTTGGATGGGTTTGGTAGGTCTGTACACATAACTGCATGCA
EST: CATGTGCTGCGGCTACTCAAGCCGATCAGCTGAGTTGCAGCTTTTCCCTG GCCTCTTCTGCTTGGATGGGTTTGGTAGGTCTGTACACATAACTGCATGCA
genomic: CATGTGCTGCGGCTACTCAAGCCGATCAGCTGAGTTGCAGCTTTTCCCTGgtaagctctg ... tgttttgcagGCCTCTTCTGCTTGGATGGGTTTGGTAGGTCTGTACACATAACTGCATGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTCCCTTTCGAAGTTGCTTTCTGCCCACTAAAGACTACACAGCATTGTCATGTGCTGCGGCTACTCAAGCCGATCAGCTGAGTTGCAGCTTTTCCCTGgtaagctctgtgaatttaagtatcgatttattgaatatgtctgcccaagaaagaaggctttctttttctttctattctgtcacacaattggattgctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaagaa