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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGCAAAAACTCACCAAGGAGGATCTCAGCAAGATGTATTTCAGTGACTTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctcaacactcctagaactgcgttgagtgctcagaagttctgttacttcgtccaattttagacgagcacatttcatttttgcagtatgctgtaa...

Basic information

species Physcomitrella patens
transcript PP1S91_92V6.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S91_92V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os04g53230.1 (Oryza sativa), 5'ss of exon 2
TTCTGCAAAAACTCACCAAGGAGGATCTCAGCAAGATGTATTTCAGTGACTTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctcaacactcctagaactgcgttg--agtgctcaga--agttctgttacttcgtccaat--tttagacgagcacattt-catttttgcagtatgctgtaa
 ||| ||    || || || || ||| | ||||| ||||||||||||||||||||||| |||||||||||||| |  |  ||||| || ||| | || |||||||          ||||  | |   ||||  |     ||    | | |  ||  || ||  |||  ||| ||  |  |  |    ||| |   | | |  |  | 
CTCTCCAGTTGCTGACAAAAGAAGATTTAAGCAAAATGTATTTCAGTGACTTCAAGATGATTGACATCAATGGATATGCTTGCTTTCTCACCAGAACTGGgtatgcttcatttgatcctttagccaagttgttaacaaccatgctactacctttgttttgtggaattattttgaacactatgtcaatattctgagaatttcttacag

upper sequence: PP1S91_92V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM5G876898_T01 (Zea mays), 5'ss of exon 2
TTCTGCAAAAACTCACCAAGGAGGATCTCAGCAAGATGTATTTCAGTGACTTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctcaacactcc-tagaactgcgttgagtgct----cagaagttctgttacttcgtccaattttagacgagcacatttcatttttgcagtatgctgtaa
 ||||||    || || || || ||| | ||||| ||||| ||||||||||||||||| |||||||||||||| |  |  ||||| || ||  | || ||||||  | || |  ||   | |   |   |||||   |     |    || | ||| ||| |   |||| ||                                 
CTCTGCAGTTGCTGACGAAAGAAGATTTGAGCAAAATGTACTTCAGTGACTTCAAGATGATTGACATCAATGGATATGCATGCTTTCTGACGAGAACTGGgtatcacttcgattctttatcgccattatttgagcagtattgtaaggattgtcttatttctt---atttcag---------------------------------

upper sequence: PP1S91_92V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA07G39190.1 (Glycine max), 5'ss of exon 3
TTCTGCAAAAACTCACCAAGGAGGATCTCAGCAAGATGTATTTCAGTGACTTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctca-----acactcctagaactgcgttgagtgctca------gaagttct-----gttacttcgtccaattttagacgagcaca-tttcatttttgcag---tatgctgtaa----------------------------------------------------------
|||| ||| | || || || |||||| | |||||| | |  ||  | || |||    |  | ||||||||||||||  ||||||| |||||||| ||||||||||   | |     |   || |  | |  | |    |  | |       ||||||      ||||       | || ||  |  |    | ||||||| ||| |    | || | | |                                                          
TTCTTCAACACCTAACAAAAGAGGATTTGAGCAAGCTATTCTTTGGGGAGTTCCGTGTGTTGGACATCAATGGCTCACAGTGCTTTCTTACCCGGACAGGgtatgcttttattgtcattttctttcaccaacatcacctatttattcttcaaagttcatccgagttatgaaactccatcttgtattactttaatttcattattgaatgtttgtgttatgagctcagagtttcttagggataccatgcataataacactttcttgattgagactttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162266704|gb|FC442857.1|FC442857
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162191712|gb|FC367445.1|FC367445
EST:     GAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: GAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|67720384|gb|BJ970643.1|BJ970643
EST:     CTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTT-GGAATTTCAGTGCCAGATGAATCTGCGCT
genomic: CTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162235775|gb|FC411078.1|FC411078
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|208351218|gb|DC918105.1|DC918105
EST:     AAGATTA-TGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: AAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162192896|gb|FC371437.1|FC371437
EST:     GAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: GAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|208394444|gb|DC928496.1|DC928496
EST:     TTCAAGANTATTGACATCNATGGCTCCGAGTGCTT-CTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGNAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|67697844|gb|BJ958077.1|BJ958077
EST:     CCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTTCAGTGCCAGATGAATCTGCGC
genomic: CCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAA-TTTCAGTGCCAGATGAATCTGCGC
EST: gi|208381246|gb|DC919136.1|DC919136
EST:     TGACATCAAT-GCTCCGAGTGC-TNCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162275940|gb|FC452008.1|FC452008
EST:     GAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: GAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162265823|gb|FC442410.1|FC442410
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|208380200|gb|DC927479.1|DC927479
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|208381756|gb|DC928419.1|DC928419
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|208367395|gb|DC951299.1|DC951299
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162225297|gb|FC402063.1|FC402063
EST:     ACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: ACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|208376539|gb|DC922570.1|DC922570
EST:     TCAAGANTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACA-G                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|15261780|gb|BI437090.1|BI437090
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162247154|gb|FC423030.1|FC423030
EST:     CCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: CCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|208368220|gb|DC951500.1|DC951500
EST:     TCAAGATTATTGACATCAATGGCTTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TCAAGATTATTGACATCAATGGC-TCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|208385198|gb|DC923578.1|DC923578
EST:     TTCCTTACCCGCACAGG                         TTACACAGGTGNAGATGGTTTCGAAATTTCAGTGCCAGATGAATTTGCGCT
genomic: TTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|208380284|gb|DC919120.1|DC919120
EST:     TTCAAGATT-TTGACATCAATGGNT-CGAGTGNTT-CTTACCCGCACA-G                         NTACACAGGTGAAGATGGTTTNG-AATTTCAGTGCCAGATGAATTTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162239713|gb|FC417112.1|FC417112
EST:     GAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: GAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162275941|gb|FC452009.1|FC452009
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|208396769|gb|DC929064.1|DC929064
EST:     AGATTA-TGACATCAA-NGCTCCGAGTG-NTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATTTGCGCT
genomic: AGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162154827|gb|FC331141.1|FC331141
EST:     CAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: CAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|208370913|gb|DC944288.1|DC944288
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGNTT-CTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATNTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162266703|gb|FC442856.1|FC442856
EST:     GAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: GAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162205059|gb|FC381768.1|FC381768
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162252065|gb|FC428304.1|FC428304
EST:     AGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: AGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162175930|gb|FC351608.1|FC351608
EST:     GTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: GTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|208351885|gb|DC917946.1|DC917946
EST:     TTCAAGATT-TTGACATCAAT-GCTCCGAGTGCTT-TTTACCCGCACAGG                         TTACACAGGTGAAGATGG-TTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162240599|gb|FC414410.1|FC414410
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162170224|gb|FC347344.1|FC347344
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162149930|gb|FC326253.1|FC326253
EST:     AGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: AGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162215801|gb|FC390866.1|FC390866
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162180786|gb|FC358287.1|FC358287
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|208398845|gb|DC920793.1|DC920793
EST:     TTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATNTGCGCT
genomic: TTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|19788881|gb|BQ040978.1|BQ040978
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|208353157|gb|DC921859.1|DC921859
EST:     ACCCGCACAGG                         -TACACA-GTGAAGATGGTTTNG-AATTTCAGTGCCAGATGAATTTGCGCT
genomic: ACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT