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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGCAAAAACTCACCAAGGAGGATCTCAGCAAGATGTATTTCAGTGACTTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctcaacactcctagaactgcgttgagtgctcagaagttctgttacttcgtccaattttagacgagcacatttcatttttgcagtatgctgtaa...

Basic information

species Physcomitrella patens
transcript PP1S91_92V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S91_92V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os04g53230.1 (Oryza sativa), 5'ss of exon 2
TTCTGCAAAAACTCACCAAGGAGGATCTCAGCAAGATGTATTTCAGTGACTTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctcaacactcctagaactgcgttg--agtgctcaga--agttctgttacttcgtccaat--tttagacgagcacattt-catttttgcagtatgctgtaa
 ||| ||    || || || || ||| | ||||| ||||||||||||||||||||||| |||||||||||||| |  |  ||||| || ||| | || |||||||          ||||  | |   ||||  |     ||    | | |  ||  || ||  |||  ||| ||  |  |  |    ||| |   | | |  |  | 
CTCTCCAGTTGCTGACAAAAGAAGATTTAAGCAAAATGTATTTCAGTGACTTCAAGATGATTGACATCAATGGATATGCTTGCTTTCTCACCAGAACTGGgtatgcttcatttgatcctttagccaagttgttaacaaccatgctactacctttgttttgtggaattattttgaacactatgtcaatattctgagaatttcttacag

upper sequence: PP1S91_92V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM5G876898_T01 (Zea mays), 5'ss of exon 2
TTCTGCAAAAACTCACCAAGGAGGATCTCAGCAAGATGTATTTCAGTGACTTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctcaacactcc-tagaactgcgttgagtgct----cagaagttctgttacttcgtccaattttagacgagcacatttcatttttgcagtatgctgtaa
 ||||||    || || || || ||| | ||||| ||||| ||||||||||||||||| |||||||||||||| |  |  ||||| || ||  | || ||||||  | || |  ||   | |   |   |||||   |     |    || | ||| ||| |   |||| ||                                 
CTCTGCAGTTGCTGACGAAAGAAGATTTGAGCAAAATGTACTTCAGTGACTTCAAGATGATTGACATCAATGGATATGCATGCTTTCTGACGAGAACTGGgtatcacttcgattctttatcgccattatttgagcagtattgtaaggattgtcttatttctt---atttcag---------------------------------

upper sequence: PP1S91_92V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA07G39190.1 (Glycine max), 5'ss of exon 3
TTCTGCAAAAACTCACCAAGGAGGATCTCAGCAAGATGTATTTCAGTGACTTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctca-----acactcctagaactgcgttgagtgctca------gaagttct-----gttacttcgtccaattttagacgagcaca-tttcatttttgcag---tatgctgtaa----------------------------------------------------------
|||| ||| | || || || |||||| | |||||| | |  ||  | || |||    |  | ||||||||||||||  ||||||| |||||||| ||||||||||   | |     |   || |  | |  | |    |  | |       ||||||      ||||       | || ||  |  |    | ||||||| ||| |    | || | | |                                                          
TTCTTCAACACCTAACAAAAGAGGATTTGAGCAAGCTATTCTTTGGGGAGTTCCGTGTGTTGGACATCAATGGCTCACAGTGCTTTCTTACCCGGACAGGgtatgcttttattgtcattttctttcaccaacatcacctatttattcttcaaagttcatccgagttatgaaactccatcttgtattactttaatttcattattgaatgtttgtgttatgagctcagagtttcttagggataccatgcataataacactttcttgattgagactttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162231764|gb|FC408526.1|FC408526
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|15261780|gb|BI437090.1|BI437090
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162167801|gb|FC344531.1|FC344531
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|208381756|gb|DC928419.1|DC928419
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162277298|gb|FC453728.1|FC453728
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162191712|gb|FC367445.1|FC367445
EST:     GAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: GAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|67720384|gb|BJ970643.1|BJ970643
EST:     CTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTT-GGAATTTCAGTGCCAGATGAATCTGCGCT
genomic: CTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162180787|gb|FC358288.1|FC358288
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162182553|gb|FC357528.1|FC357528
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162235775|gb|FC411078.1|FC411078
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|208351218|gb|DC918105.1|DC918105
EST:     AAGATTA-TGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: AAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162266704|gb|FC442857.1|FC442857
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162192896|gb|FC371437.1|FC371437
EST:     GAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: GAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162161347|gb|FC336773.1|FC336773
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|208377334|gb|DC927036.1|DC927036
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|208367395|gb|DC951299.1|DC951299
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162213576|gb|FC389448.1|FC389448
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|208394444|gb|DC928496.1|DC928496
EST:     TTCAAGANTATTGACATCNATGGCTCCGAGTGCTT-CTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGNAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162238182|gb|FC414294.1|FC414294
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|67697844|gb|BJ958077.1|BJ958077
EST:     CCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTTCAGTGCCAGATGAATCTGCGC
genomic: CCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAA-TTTCAGTGCCAGATGAATCTGCGC
EST: gi|208381246|gb|DC919136.1|DC919136
EST:     TGACATCAAT-GCTCCGAGTGC-TNCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162275940|gb|FC452008.1|FC452008
EST:     GAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: GAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162265823|gb|FC442410.1|FC442410
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162157672|gb|FC332994.1|FC332994
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162187933|gb|FC364923.1|FC364923
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162174880|gb|FC351672.1|FC351672
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162225297|gb|FC402063.1|FC402063
EST:     ACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: ACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162175931|gb|FC351609.1|FC351609
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162225298|gb|FC402064.1|FC402064
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162198309|gb|FC372622.1|FC372622
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162192897|gb|FC371438.1|FC371438
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162170980|gb|FC346879.1|FC346879
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|208376539|gb|DC922570.1|DC922570
EST:     TCAAGANTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACA-G                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|208380200|gb|DC927479.1|DC927479
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162158472|gb|FC334475.1|FC334475
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162185491|gb|FC361221.1|FC361221
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162195904|gb|FC375637.1|FC375637
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162240600|gb|FC414411.1|FC414411
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162247154|gb|FC423030.1|FC423030
EST:     CCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: CCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162184151|gb|FC358897.1|FC358897
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|208368220|gb|DC951500.1|DC951500
EST:     TCAAGATTATTGACATCAATGGCTTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TCAAGATTATTGACATCAATGGC-TCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|208385198|gb|DC923578.1|DC923578
EST:     TTCCTTACCCGCACAGG                         TTACACAGGTGNAGATGGTTTCGAAATTTCAGTGCCAGATGAATTTGCGCT
genomic: TTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162177660|gb|FC353246.1|FC353246
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGA
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGA
EST: gi|162219603|gb|FC395599.1|FC395599
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162213768|gb|FC390383.1|FC390383
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|208380284|gb|DC919120.1|DC919120
EST:     TTCAAGATT-TTGACATCAATGGNT-CGAGTGNTT-CTTACCCGCACA-G                         NTACACAGGTGAAGATGGTTTNG-AATTTCAGTGCCAGATGAATTTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162174543|gb|FC350198.1|FC350198
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGA
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGA
EST: gi|162210520|gb|FC386816.1|FC386816
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162183339|gb|FC359254.1|FC359254
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162239713|gb|FC417112.1|FC417112
EST:     GAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: GAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162247181|gb|FC423031.1|FC423031
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|208396769|gb|DC929064.1|DC929064
EST:     AGATTA-TGACATCAA-NGCTCCGAGTG-NTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATTTGCGCT
genomic: AGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162217570|gb|FC393974.1|FC393974
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162154827|gb|FC331141.1|FC331141
EST:     CAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: CAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|208370913|gb|DC944288.1|DC944288
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGNTT-CTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATNTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162166198|gb|FC343428.1|FC343428
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162161618|gb|FC339033.1|FC339033
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162266703|gb|FC442856.1|FC442856
EST:     GAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: GAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162239714|gb|FC417113.1|FC417113
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162205059|gb|FC381768.1|FC381768
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162252065|gb|FC428304.1|FC428304
EST:     AGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: AGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|19788881|gb|BQ040978.1|BQ040978
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162175930|gb|FC351608.1|FC351608
EST:     GTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: GTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162174857|gb|FC351649.1|FC351649
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCG
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCG
EST: gi|208351885|gb|DC917946.1|DC917946
EST:     TTCAAGATT-TTGACATCAAT-GCTCCGAGTGCTT-TTTACCCGCACAGG                         TTACACAGGTGAAGATGG-TTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162240599|gb|FC414410.1|FC414410
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162170224|gb|FC347344.1|FC347344
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162149930|gb|FC326253.1|FC326253
EST:     AGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: AGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162215801|gb|FC390866.1|FC390866
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162241808|gb|FC418063.1|FC418063
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTT
EST: gi|162175252|gb|FC351450.1|FC351450
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162180786|gb|FC358287.1|FC358287
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|208398845|gb|DC920793.1|DC920793
EST:     TTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATNTGCGCT
genomic: TTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|162275941|gb|FC452009.1|FC452009
EST:     TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGG                         TTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
genomic: TTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT
EST: gi|208353157|gb|DC921859.1|DC921859
EST:     ACCCGCACAGG                         -TACACA-GTGAAGATGGTTTNG-AATTTCAGTGCCAGATGAATTTGCGCT
genomic: ACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 28 (upstream exon), 35 (downstream exon)
Score: 18

TTCTGCAAAAACTCACCAAGGAGGATCTCAGCAAGATGTATTTCAGTGACTTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctc ... gcggatgcagTTACACAGGTGAAGATGGTTTCGAAATTTCAGTGCCAGATGAATCTGCGCTGGATTTGACCAAGGCCATCATGGATAAGGCTCCGGGGAAGCTCCGCTTA




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