Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208356782|gb|DC906444.1|DC906444EST: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGA ACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGT
genomic: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGAgtaagtcctt ... tgttgatcagACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGT
EST:
gi|100452748|gb|CJ975424.1|CJ975424EST: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGA ACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGT
genomic: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGAgtaagtcctt ... tgttgatcagACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGT
EST:
gi|100446911|gb|CJ971210.1|CJ971210EST: AAAGTCTCTCATCAATGAAGAAA-TATTCTCAGTGCCATATCTGGCCGGA ACATTATTGTGGANGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGT
genomic: AAAGTCTCTCATCAATGAAGAAAATATTCTCAGTGCCATATCTGGCCGGAgtaagtcctt ... tgttgatcagACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttataacagaagaagagcttcatgataagtatcttaccgtcgttttgttgatcagACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGTCGTCGTCAGAG
tcgtttt CT-rich tract
ataagtat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaacagcttattcgtgtggtttcgaatccacccgattcgtgctcgttataacagaagaagagcttcatgataagtatcttaccgtcgttttgttgatcagACATTATTGTGGAGGATCACTACGGAAGGTTACGTGTTAATCCAGAAGCGTCGTCGTCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC