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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTCAATACAAGAATGTCGAGTTCACAGTATGGGATGTTGGAGGTCAGGAGAAATTGCGGCCCCTTTGGCGGCATTACTTCAATAATACTGACGGTTTGgtaagtattctttataggttgctgtttcagtagacctttttttctttttttcatacaactttttatgatatatatatatatatatatatatatatatata...

Basic information

species Physcomitrella patens
transcript PP1S91_59V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S91_59V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os10g42940.1 (Oryza sativa), 5'ss of exon 3
AGTTCAATACAAGAATGTCGAGTTCACAGTATGGGATGTTGGAGGTCAGGAGAAATTGCGGCCCCTTTGGCGGCATTACTTCAATAATACTGACGGTTTGgtaagtattctttataggttgctgttt---cagtag-acctttttttctttttttcatacaactttttatgatatatatatatatatatatatatatatatata
|||||||||||||||||| | |||||| || ||||||||||| || ||||| |||||| ||||| | ||| |||| |||||||| || || || | | |||| | | || |||     |     |||   |||  | |          ||| || || | ||| |    |  | |  | |   |  |   | | |   | |   
AGTTCAATACAAGAATGTGGTGTTCACTGTGTGGGATGTTGGTGGCCAGGAAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTGgtcactctttttttcccctcttcttttatccagcggcatagggaaacatttcttacacataacgtacc-tcctttgaacaagcaattcactttgtgacttt---

upper sequence: PP1S91_59V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os02g47110.1 (Oryza sativa), 5'ss of exon 3
AGTTCAATACAAGAATGTCGAGTTCACAGTATGGGATGTTGGAGGTCAGGAGAAATTGCGGCCCCTTTGGCGGCATTACTTCAATAATACTGACGGTTTGgtaagtatt-ctttataggttgctgtttcagtagacctttttttctttttttcatacaactttttatgatatatatatatatatatatatat-atatatata
||| || |||||||| ||   ||| |||||||||||||| || || || ||||| ||| |||| || ||| ||||||||||||||||||| || ||||||||| || ||  ||  |  || | | | |   | |   |   |      |||   | || | ||  || | | |   | | |  |   ||| | || |  | |
AGTACAGTACAAGAACGTGATGTTTACAGTATGGGATGTCGGTGGCCAAGAGAAGTTGAGGCCTCTGTGGAGGCATTACTTCAATAATACGGATGGTTTGgtatgttttgtttcctttgtggttatctttttgggaatacgtgaaagattt--gtgcatcgttgcattaaagaaggaaagaagtggttatttgattttgaca

upper sequence: PP1S91_59V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G011518_T01 (Zea mays), 5'ss of exon 3
AGTTCAATACAAGAATGTCGAGTTCACAGTATGGGATGTTGGAGGTCAGGAGAAATTGCGGCCCCTTTGGCGGCATTACTTCAATAATACTGACGGTTTGgtaagtattctttataggttgctgtttca---gtagacctttttttctttttttcatacaactttttatgatatatatatatatatatatatatatatatata-----
 ||||||||||||||||| | |||||| || ||||||||||| || ||||||||  |  ||||||| ||| |||| |||||||| || ||||| | | |||| | || |||      ||| ||||||||   ||  | |    |   || | ||||   || ||   ||  || ||| |  | | |||      || | | |      
GGTTCAATACAAGAATGTAGTGTTCACCGTGTGGGATGTTGGTGGCCAGGAGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAACAACACTGATGCTCTGgtcattactctc-----gtttctgtttcacaagtgaagcggcataaattctattca---aagttgaaattttacatagaagtgtttatgctgtaatgtttcttccact

upper sequence: PP1S91_59V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G113995_T01 (Zea mays), 5'ss of exon 3
AGTTCAATACAAGAATGTCGAGTTCACAGTATGGGATGTTGGAGGTCAGGAGAAATTGCGGCCCCTTTGGCGGCATTACTTCAATAATACTGACGGTTTGgtaagtattctttataggttgctgtt--tcagtagacctttttttctttttttcatacaactttttatgatatatatatatatatatatatatatatatata
||||||||||||||||||   ||| || || ||||||||||| || || || || ||| ||||| | ||| |||| |||||||| |||||||| || |||||| || || ||  ||   || | ||  || |||  |   ||| |  || ||       |    ||  | ||  ||| | | | |   |   | |||     
AGTTCAATACAAGAATGTGATGTTTACTGTGTGGGATGTTGGTGGCCAAGAAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTGgtatgttttattgctaaaatgatattgatctgtactctactttgtaattgttctgcttgatgagttgggttacttatgtttgtcttggtgagtttatggg--

upper sequence: PP1S91_59V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G106795_T03 (Zea mays), 5'ss of exon 3
AGTTCAATACAAGAATGTCGAGTTCACAGTATGGGATGTTGGAGGTCAGGAGAAATTGCGGCCCCTTTGGCGGCATTACTTCAATAATACTGACGGTTTGgtaagtattctttataggttgctgtttcagtagacctttttttctttttttcatacaactttttatgatatatatatatatatatatatatatatatata---
||||||||||||||||||   ||| || || ||||||||||| || || || || ||| ||||| | ||| |||| |||||||| |||||||| || |||||| || || ||  |   ||      |   |  |    | |   || |||  | |    | |   |||    |     ||| ||| | |  |  | |  |   
AGTTCAATACAAGAATGTGATGTTTACTGTTTGGGATGTTGGTGGCCAAGAAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAACAATACTGATGGCTTGgtatgt-ttattattcttttaagacctttatgaaatgatatcgattgtttgta-attgttctgcttgacgggttgggttatttat-tcttcacttcttgagtt

upper sequence: PP1S91_59V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA11G09790.3 (Glycine max), 5'ss of exon 2
AGTTCAATACAAGAATGTCGAGTTCACAGTATGGGATGTTGGAGGTCAGGAGAAATTGCGGCCCCTTTGGCGGCATTACTTCAATAATACTGACGGTTTGgtaag----------tattctttataggttgctgtttcagt-agacctttttttctttttttcatacaactttttatgatatatatatat-atatatatatatatatatata--------------------------------------------------------------------
 ||||| || |||||||| |  ||||| || |||||||||||||| || ||||||||  || | |||||| |||| || || || |||||||| |||||||||||           ||| ||||| || |  | | | | | | | |     ||||    |||    | ||| |   | | |   | ||| | | |   ||  || | |  |                                                                    
GGTTCAGTATAAGAATGTTGTTTTCACGGTTTGGGATGTTGGAGGGCAAGAGAAATTAAGGGCACTTTGGAGGCACTATTTTAACAATACTGATGGTTTGgtaagaattagtttccattatttattgggttttatcttaatgaaaacacaacttctgcaattcg-gtatcttgtggagttttccttctattacaaaatcattcatctgtccaatagaactgaaaagacatgatacagatctgtagttgccaggttgatacatatgtgcatatttatgcag

upper sequence: PP1S91_59V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT5G17060.1 (Arabidopsis thaliana), 5'ss of exon 3
AGTTCAATACAAGAATGTCGAGTTCACAGTATGGGATGTTGGAGGTCAGGAGAAATTGCGGCCCCTTTGGCGGCATTACTTCAATAATACTGACGGTTTGgtaagtat------tctttataggttgctg-tttcagt-agac-ctttttttctttttttcatacaactttttat-gatatatatatatatatatatatatatatatata----------------------------------------------------------------------------------------
|||||| |||||||||||   ||||||||| ||||||||||| || || |||||| || | || |||||| |||||||||||||||||||||| ||  | ||| ||||      | ||| | | ||  || ||||||| |||  |||   ||      ||  | || || | | | |  |||| |     ||||| |   |||  || |                                                                                         
AGTTCAGTACAAGAATGTGATGTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAACTGAGACCTCTTTGGAGGCATTACTTCAATAATACTGATGGACTTgtacgtatatagtttttttttcgatttttgctttcagtcagatacttaactttcaaggtttttccatctctatgttggcatatgttatcctatatttggttatg-atgttgcagtatcatatgttgcttggccaatctttagatctttttccatctttatcgaccatggtataagactactctatgatgctcttgcag

upper sequence: PP1S91_59V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT3G03120.1 (Arabidopsis thaliana), 5'ss of exon 3
AGTTCAATACAAGAATGTCGAGTTCACAGTATGGGATGTTGGAGGTCAGGAGAAATTGCGGCCCCTTTGGCGGCATTACTTCAATAATACTGACGGTTTGgtaagt--------attcttta-------------taggttgctgtttcagtagacctttttttctttttttcatacaactttttatgatatatatatatatatatatatatatatatata-------------
|||||| ||||||||||||   |||||||| ||||||||||| || || |||||  || ||||| | ||| ||||||||||||||||||| || ||  | ||||||        ||| || |             ||| | | |   ||| ||||   | || ||||  |  || |  | || | ||| | | ||   |  | |    ||  ||||   |              
AGTTCAGTACAAGAATGTCATCTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAGCTGAGGCCCTTGTGGAGGCATTACTTCAATAATACCGATGGACTTgtaagtctctacttatttttcacgctgcctctagttagatagttaactca-tagagtctcttctcttcatgacagatgatttctcatgttttgtaaggaattttcctgattgatattggtcgatgcatttgcag